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Identification Taxonomy Ontology Physical properties Spectra Biological properties Concentrations Links References enzymes (131)transporters (1) Show 132 proteins XML

enzymes (131)transporters (1) Show 132 proteins

Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-19 06:31:21 UTC

Update Date

2022-11-30 20:10:13 UTC

HMDB ID

HMDB0297117

Secondary Accession Numbers

None

Metabolite Identification

Common Name

DG(8:0/0:0/PGD2)

Description

DG(8:0/0:0/PGD2) belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on DG(8:0/0:0/PGD2).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309192108312D          

 39 39  0  0  1  0            999 V2000
    3.7566  -12.3928    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0421  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0421  -13.6303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3277  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6132  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8987  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1843  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5302  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2447  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9592  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4711  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1856  -12.3928    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9000  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6145  -12.3928    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3290  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3290  -13.6303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0434  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7579  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4724  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1868  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9013  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9013  -11.5678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6158  -11.1553    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.7020  -10.3348    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.0889   -9.7828    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5090  -10.1633    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9215  -10.8778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7420  -10.9640    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3695  -11.4909    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.5410  -12.2978    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9279  -12.8499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0994  -13.6569    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4863  -14.2089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8840  -13.9118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0556  -14.7188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8402  -14.9737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0117  -15.7807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7963  -16.0356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1856  -11.5678    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  1 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 23 29  1  0  0  0  0
 29 30  1  6  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 12 39  1  1  0  0  0
M  END

HMDB0297117
     RDKit          3D
DG(8:0/0:0/PGD2)
 91 91  0  0  0  0  0  0  0  0999 V2000
  -12.5525   -0.1560   -0.1730 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4801   -1.1260    0.2742 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1037   -0.4367    0.3564 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1323    0.6856    1.3151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8794    1.4162    1.5379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1784    2.1623    0.4953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6065    1.4869   -0.6957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6100    0.4579   -0.2228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9058   -0.7589   -0.1136 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982    0.8072    0.1218 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4261   -0.2192    0.5517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0843    0.4265    0.8860 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2565    1.3538    1.9060 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0673   -0.6507    1.2486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9034   -1.5707    0.2055 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4443   -1.2796   -1.0630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1438   -0.0820   -1.2924 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2804   -2.2526   -2.1597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2599   -3.2893   -1.8464 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1288   -2.7458   -1.6006 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5769   -2.0217   -2.7909 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9566   -0.7732   -2.7829 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9830    0.0497   -1.5806 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4435    0.4931   -1.3919 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9624    1.3023   -2.5366 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9633    1.9110   -3.2912 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7645    2.4421   -1.8822 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0126    2.6234   -0.6133 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7513    3.7109   -0.0866 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6551    1.2668   -0.1304 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7927    0.6250    0.5998 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9157    1.2560    0.9097 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0137    0.5237    1.6495 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4907   -0.6562    2.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0910    0.2943    0.5909 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2697   -0.4382    1.1433 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9160    0.2980    2.2754 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0887   -0.5320    2.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0275   -0.6707    1.5679 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5114   -0.7268   -0.3192 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7385    0.5583    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2733    0.3120   -1.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3739   -1.8950   -0.5141 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7358   -1.6440    1.2135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4247   -1.2320    0.7064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8964   -0.1091   -0.6581 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9502    1.4407    1.0335 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4419    0.2441    2.3162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1683    0.6479    2.0318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0594    2.1019    2.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2854    2.6735    1.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7670    3.0945    0.1760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2731    1.1022   -1.4485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9324    2.3023   -1.1791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7910   -0.7285    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3006   -1.0072   -0.2224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6828    0.9876    0.0231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2142    1.5018    2.0600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1195   -0.1052    1.5105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4762   -1.1884    2.1263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0172   -1.7139   -3.1240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2452   -2.8126   -2.3470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447   -4.0437   -2.6897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5817   -3.8540   -0.9340 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7941   -3.6580   -1.5033 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1105   -2.1856   -0.6617 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5823   -2.5953   -3.7324 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2878   -0.2699   -3.7267 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6929   -0.3950   -0.6365 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4197    1.0246   -1.7177 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9914   -0.4982   -1.3077 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6224    0.6604   -3.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9617    2.8982   -3.2036 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7151    3.3693   -2.5169 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7948    2.0986   -1.7506 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7361    1.2810    0.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7403   -0.4205    0.9166 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0214    2.3035    0.6210 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3662    1.2009    2.4509 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9764   -1.4511    1.8347 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6239   -0.2951   -0.2277 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4155    1.2789    0.1967 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9889   -1.4809    1.4317 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0352   -0.5113    0.3288 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2435    1.2869    1.9483 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1688    0.4488    3.0865 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6062   -0.1028    3.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6817   -1.5654    2.9508 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0560   -0.6876    1.9567 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -1.5991    0.9709 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8939    0.1969    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
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 25 26  1  0
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 38 39  1  0
 30 24  1  0
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 37 85  1  0
 37 86  1  0
 38 87  1  0
 38 88  1  0
 39 89  1  0
 39 90  1  0
 39 91  1  0
M  END


  Mrv1652309192108312D          

 39 39  0  0  1  0            999 V2000
    3.7566  -12.3928    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0421  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0421  -13.6303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3277  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6132  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8987  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1843  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5302  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2447  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9592  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4711  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1856  -12.3928    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9000  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6145  -12.3928    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3290  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3290  -13.6303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0434  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.4724  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1868  -12.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9013  -12.3928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9013  -11.5678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6158  -11.1553    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.7020  -10.3348    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.0889   -9.7828    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5090  -10.1633    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9215  -10.8778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7420  -10.9640    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.3695  -11.4909    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.5410  -12.2978    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9279  -12.8499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0994  -13.6569    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4863  -14.2089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8840  -13.9118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0556  -14.7188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8402  -14.9737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0117  -15.7807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7963  -16.0356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1856  -11.5678    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  1 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 23 29  1  0  0  0  0
 29 30  1  6  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 12 39  1  1  0  0  0
M  END
> <DATABASE_ID>
HMDB0297117

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCC(=O)OC[C@@H](O)COC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C31H52O8/c1-3-5-7-8-13-17-30(36)38-22-25(33)23-39-31(37)18-14-10-9-12-16-26-27(29(35)21-28(26)34)20-19-24(32)15-11-6-4-2/h9,12,19-20,24-28,32-34H,3-8,10-11,13-18,21-23H2,1-2H3/b12-9-,20-19+/t24-,25+,26+,27+,28-/m0/s1

> <INCHI_KEY>
FHYNZVXVWCEUTF-QQOIVRHUSA-N

> <FORMULA>
C31H52O8

> <MOLECULAR_WEIGHT>
552.749

> <EXACT_MASS>
552.366218634

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
91

> <JCHEM_AVERAGE_POLARIZABILITY>
65.48127084029116

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl octanoate

> <ALOGPS_LOGP>
4.84

> <JCHEM_LOGP>
5.4152318213333315

> <ALOGPS_LOGS>
-5.12

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.131350673534545

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.471376523511005

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5973943340377592

> <JCHEM_POLAR_SURFACE_AREA>
130.36

> <JCHEM_REFRACTIVITY>
153.24240000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.16e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl octanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0297117
     RDKit          3D
DG(8:0/0:0/PGD2)
 91 91  0  0  0  0  0  0  0  0999 V2000
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    1.5823   -2.5953   -3.7324 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.6929   -0.3950   -0.6365 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4197    1.0246   -1.7177 H   0  0  0  0  0  0  0  0  0  0  0  0
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 38 87  1  0
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 39 90  1  0
 39 91  1  0
M  END

HEADER    PROTEIN                                 19-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-SEP-21         0                                  
HETATM    1  O   UNK     0       7.012 -23.133   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       5.679 -23.903   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.679 -25.443   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.345 -23.133   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.011 -23.903   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.678 -23.133   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.344 -23.903   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.990 -23.133   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.323 -23.903   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.657 -23.133   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.346 -23.903   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.680 -23.133   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.013 -23.903   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      12.347 -23.133   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      13.681 -23.903   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      13.681 -25.443   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      15.014 -23.133   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      16.348 -23.903   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      17.682 -23.133   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      19.015 -23.903   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      20.349 -23.133   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      20.349 -21.593   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      21.683 -20.823   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      21.844 -19.292   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      20.699 -18.261   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      23.350 -18.972   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      24.120 -20.305   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      25.652 -20.466   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      23.090 -21.450   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      23.410 -22.956   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      22.265 -23.986   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      22.586 -25.493   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      21.441 -26.523   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      24.050 -25.969   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      24.370 -27.475   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      25.835 -27.951   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      26.155 -29.457   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      27.620 -29.933   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0       9.680 -21.593   0.000  0.00  0.00           O+0
CONECT    1    2   11                                                       
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    1   12                                                       
CONECT   12   11   13   39                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   29                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   23   30                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39   12                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   78    0
END

COMPND    HMDB0297117
HETATM    1  C1  UNL     1     -12.553  -0.156  -0.173  1.00  0.00           C  
HETATM    2  C2  UNL     1     -11.480  -1.126   0.274  1.00  0.00           C  
HETATM    3  C3  UNL     1     -10.104  -0.437   0.356  1.00  0.00           C  
HETATM    4  C4  UNL     1     -10.132   0.686   1.315  1.00  0.00           C  
HETATM    5  C5  UNL     1      -8.879   1.416   1.538  1.00  0.00           C  
HETATM    6  C6  UNL     1      -8.178   2.162   0.495  1.00  0.00           C  
HETATM    7  C7  UNL     1      -7.607   1.487  -0.696  1.00  0.00           C  
HETATM    8  C8  UNL     1      -6.610   0.458  -0.223  1.00  0.00           C  
HETATM    9  O1  UNL     1      -6.906  -0.759  -0.114  1.00  0.00           O  
HETATM   10  O2  UNL     1      -5.298   0.807   0.122  1.00  0.00           O  
HETATM   11  C9  UNL     1      -4.426  -0.219   0.552  1.00  0.00           C  
HETATM   12  C10 UNL     1      -3.084   0.426   0.886  1.00  0.00           C  
HETATM   13  O3  UNL     1      -3.256   1.354   1.906  1.00  0.00           O  
HETATM   14  C11 UNL     1      -2.067  -0.651   1.249  1.00  0.00           C  
HETATM   15  O4  UNL     1      -1.903  -1.571   0.206  1.00  0.00           O  
HETATM   16  C12 UNL     1      -1.444  -1.280  -1.063  1.00  0.00           C  
HETATM   17  O5  UNL     1      -1.144  -0.082  -1.292  1.00  0.00           O  
HETATM   18  C13 UNL     1      -1.280  -2.253  -2.160  1.00  0.00           C  
HETATM   19  C14 UNL     1      -0.260  -3.289  -1.846  1.00  0.00           C  
HETATM   20  C15 UNL     1       1.129  -2.746  -1.601  1.00  0.00           C  
HETATM   21  C16 UNL     1       1.577  -2.022  -2.791  1.00  0.00           C  
HETATM   22  C17 UNL     1       1.957  -0.773  -2.783  1.00  0.00           C  
HETATM   23  C18 UNL     1       1.983   0.050  -1.581  1.00  0.00           C  
HETATM   24  C19 UNL     1       3.444   0.493  -1.392  1.00  0.00           C  
HETATM   25  C20 UNL     1       3.962   1.302  -2.537  1.00  0.00           C  
HETATM   26  O6  UNL     1       2.963   1.911  -3.291  1.00  0.00           O  
HETATM   27  C21 UNL     1       4.765   2.442  -1.882  1.00  0.00           C  
HETATM   28  C22 UNL     1       4.013   2.623  -0.613  1.00  0.00           C  
HETATM   29  O7  UNL     1       3.751   3.711  -0.087  1.00  0.00           O  
HETATM   30  C23 UNL     1       3.655   1.267  -0.130  1.00  0.00           C  
HETATM   31  C24 UNL     1       4.793   0.625   0.600  1.00  0.00           C  
HETATM   32  C25 UNL     1       5.916   1.256   0.910  1.00  0.00           C  
HETATM   33  C26 UNL     1       7.014   0.524   1.649  1.00  0.00           C  
HETATM   34  O8  UNL     1       6.491  -0.656   2.108  1.00  0.00           O  
HETATM   35  C27 UNL     1       8.091   0.294   0.591  1.00  0.00           C  
HETATM   36  C28 UNL     1       9.270  -0.438   1.143  1.00  0.00           C  
HETATM   37  C29 UNL     1       9.916   0.298   2.275  1.00  0.00           C  
HETATM   38  C30 UNL     1      11.089  -0.532   2.757  1.00  0.00           C  
HETATM   39  C31 UNL     1      12.027  -0.671   1.568  1.00  0.00           C  
HETATM   40  H1  UNL     1     -13.511  -0.727  -0.319  1.00  0.00           H  
HETATM   41  H2  UNL     1     -12.739   0.558   0.646  1.00  0.00           H  
HETATM   42  H3  UNL     1     -12.273   0.312  -1.132  1.00  0.00           H  
HETATM   43  H4  UNL     1     -11.374  -1.895  -0.514  1.00  0.00           H  
HETATM   44  H5  UNL     1     -11.736  -1.644   1.213  1.00  0.00           H  
HETATM   45  H6  UNL     1      -9.425  -1.232   0.706  1.00  0.00           H  
HETATM   46  H7  UNL     1      -9.896  -0.109  -0.658  1.00  0.00           H  
HETATM   47  H8  UNL     1     -10.950   1.441   1.033  1.00  0.00           H  
HETATM   48  H9  UNL     1     -10.442   0.244   2.316  1.00  0.00           H  
HETATM   49  H10 UNL     1      -8.168   0.648   2.032  1.00  0.00           H  
HETATM   50  H11 UNL     1      -9.059   2.102   2.461  1.00  0.00           H  
HETATM   51  H12 UNL     1      -7.285   2.673   1.016  1.00  0.00           H  
HETATM   52  H13 UNL     1      -8.767   3.094   0.176  1.00  0.00           H  
HETATM   53  H14 UNL     1      -8.273   1.102  -1.448  1.00  0.00           H  
HETATM   54  H15 UNL     1      -6.932   2.302  -1.179  1.00  0.00           H  
HETATM   55  H16 UNL     1      -4.791  -0.728   1.467  1.00  0.00           H  
HETATM   56  H17 UNL     1      -4.301  -1.007  -0.222  1.00  0.00           H  
HETATM   57  H18 UNL     1      -2.683   0.988   0.023  1.00  0.00           H  
HETATM   58  H19 UNL     1      -4.214   1.502   2.060  1.00  0.00           H  
HETATM   59  H20 UNL     1      -1.120  -0.105   1.511  1.00  0.00           H  
HETATM   60  H21 UNL     1      -2.476  -1.188   2.126  1.00  0.00           H  
HETATM   61  H22 UNL     1      -1.017  -1.714  -3.124  1.00  0.00           H  
HETATM   62  H23 UNL     1      -2.245  -2.813  -2.347  1.00  0.00           H  
HETATM   63  H24 UNL     1      -0.245  -4.044  -2.690  1.00  0.00           H  
HETATM   64  H25 UNL     1      -0.582  -3.854  -0.934  1.00  0.00           H  
HETATM   65  H26 UNL     1       1.794  -3.658  -1.503  1.00  0.00           H  
HETATM   66  H27 UNL     1       1.110  -2.186  -0.662  1.00  0.00           H  
HETATM   67  H28 UNL     1       1.582  -2.595  -3.732  1.00  0.00           H  
HETATM   68  H29 UNL     1       2.288  -0.270  -3.727  1.00  0.00           H  
HETATM   69  H30 UNL     1       1.693  -0.395  -0.636  1.00  0.00           H  
HETATM   70  H31 UNL     1       1.420   1.025  -1.718  1.00  0.00           H  
HETATM   71  H32 UNL     1       3.991  -0.498  -1.308  1.00  0.00           H  
HETATM   72  H33 UNL     1       4.622   0.660  -3.159  1.00  0.00           H  
HETATM   73  H34 UNL     1       2.962   2.898  -3.204  1.00  0.00           H  
HETATM   74  H35 UNL     1       4.715   3.369  -2.517  1.00  0.00           H  
HETATM   75  H36 UNL     1       5.795   2.099  -1.751  1.00  0.00           H  
HETATM   76  H37 UNL     1       2.736   1.281   0.502  1.00  0.00           H  
HETATM   77  H38 UNL     1       4.740  -0.420   0.917  1.00  0.00           H  
HETATM   78  H39 UNL     1       6.021   2.304   0.621  1.00  0.00           H  
HETATM   79  H40 UNL     1       7.366   1.201   2.451  1.00  0.00           H  
HETATM   80  H41 UNL     1       6.976  -1.451   1.835  1.00  0.00           H  
HETATM   81  H42 UNL     1       7.624  -0.295  -0.228  1.00  0.00           H  
HETATM   82  H43 UNL     1       8.416   1.279   0.197  1.00  0.00           H  
HETATM   83  H44 UNL     1       8.989  -1.481   1.432  1.00  0.00           H  
HETATM   84  H45 UNL     1      10.035  -0.511   0.329  1.00  0.00           H  
HETATM   85  H46 UNL     1      10.244   1.287   1.948  1.00  0.00           H  
HETATM   86  H47 UNL     1       9.169   0.449   3.087  1.00  0.00           H  
HETATM   87  H48 UNL     1      11.606  -0.103   3.624  1.00  0.00           H  
HETATM   88  H49 UNL     1      10.682  -1.565   2.951  1.00  0.00           H  
HETATM   89  H50 UNL     1      13.056  -0.688   1.957  1.00  0.00           H  
HETATM   90  H51 UNL     1      11.787  -1.599   0.971  1.00  0.00           H  
HETATM   91  H52 UNL     1      11.894   0.197   0.860  1.00  0.00           H  
CONECT    1    2   40   41   42
CONECT    2    3   43   44
CONECT    3    4   45   46
CONECT    4    5   47   48
CONECT    5    6   49   50
CONECT    6    7   51   52
CONECT    7    8   53   54
CONECT    8    9    9   10
CONECT   10   11
CONECT   11   12   55   56
CONECT   12   13   14   57
CONECT   13   58
CONECT   14   15   59   60
CONECT   15   16
CONECT   16   17   17   18
CONECT   18   19   61   62
CONECT   19   20   63   64
CONECT   20   21   65   66
CONECT   21   22   22   67
CONECT   22   23   68
CONECT   23   24   69   70
CONECT   24   25   30   71
CONECT   25   26   27   72
CONECT   26   73
CONECT   27   28   74   75
CONECT   28   29   29   30
CONECT   30   31   76
CONECT   31   32   32   77
CONECT   32   33   78
CONECT   33   34   35   79
CONECT   34   80
CONECT   35   36   81   82
CONECT   36   37   83   84
CONECT   37   38   85   86
CONECT   38   39   87   88
CONECT   39   89   90   91
END

HMDB0297117
     RDKit          3D
DG(8:0/0:0/PGD2)
 91 91  0  0  0  0  0  0  0  0999 V2000
  -12.5525   -0.1560   -0.1730 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4801   -1.1260    0.2742 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1037   -0.4367    0.3564 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1323    0.6856    1.3151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8794    1.4162    1.5379 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1784    2.1623    0.4953 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6065    1.4869   -0.6957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6100    0.4579   -0.2228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9058   -0.7589   -0.1136 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982    0.8072    0.1218 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4261   -0.2192    0.5517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0843    0.4265    0.8860 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2565    1.3538    1.9060 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0673   -0.6507    1.2486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9034   -1.5707    0.2055 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4443   -1.2796   -1.0630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1438   -0.0820   -1.2924 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2804   -2.2526   -2.1597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2599   -3.2893   -1.8464 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1288   -2.7458   -1.6006 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5769   -2.0217   -2.7909 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9566   -0.7732   -2.7829 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9830    0.0497   -1.5806 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4435    0.4931   -1.3919 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9624    1.3023   -2.5366 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9633    1.9110   -3.2912 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7645    2.4421   -1.8822 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0126    2.6234   -0.6133 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7513    3.7109   -0.0866 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6551    1.2668   -0.1304 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7927    0.6250    0.5998 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9157    1.2560    0.9097 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0137    0.5237    1.6495 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4907   -0.6562    2.1083 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0910    0.2943    0.5909 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2697   -0.4382    1.1433 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9160    0.2980    2.2754 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0887   -0.5320    2.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0275   -0.6707    1.5679 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5114   -0.7268   -0.3192 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7385    0.5583    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2733    0.3120   -1.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3739   -1.8950   -0.5141 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7358   -1.6440    1.2135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4247   -1.2320    0.7064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8964   -0.1091   -0.6581 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9502    1.4407    1.0335 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4419    0.2441    2.3162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1683    0.6479    2.0318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0594    2.1019    2.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2854    2.6735    1.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7670    3.0945    0.1760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2731    1.1022   -1.4485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9324    2.3023   -1.1791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7910   -0.7285    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3006   -1.0072   -0.2224 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6828    0.9876    0.0231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2142    1.5018    2.0600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1195   -0.1052    1.5105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4762   -1.1884    2.1263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0172   -1.7139   -3.1240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2452   -2.8126   -2.3470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2447   -4.0437   -2.6897 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5817   -3.8540   -0.9340 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7941   -3.6580   -1.5033 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1105   -2.1856   -0.6617 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5823   -2.5953   -3.7324 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2878   -0.2699   -3.7267 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6929   -0.3950   -0.6365 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4197    1.0246   -1.7177 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9914   -0.4982   -1.3077 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6224    0.6604   -3.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9617    2.8982   -3.2036 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7151    3.3693   -2.5169 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7948    2.0986   -1.7506 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7361    1.2810    0.5016 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7403   -0.4205    0.9166 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0214    2.3035    0.6210 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3662    1.2009    2.4509 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9764   -1.4511    1.8347 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6239   -0.2951   -0.2277 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4155    1.2789    0.1967 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9889   -1.4809    1.4317 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0352   -0.5113    0.3288 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2435    1.2869    1.9483 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1688    0.4488    3.0865 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6062   -0.1028    3.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6817   -1.5654    2.9508 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0560   -0.6876    1.9567 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7874   -1.5991    0.9709 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8939    0.1969    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
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 14 15  1  0
 15 16  1  0
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 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
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 24 25  1  0
 25 26  1  0
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 27 28  1  0
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 31 32  2  0
 32 33  1  0
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 38 39  1  0
 30 24  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  2 43  1  0
  2 44  1  0
  3 45  1  0
  3 46  1  0
  4 47  1  0
  4 48  1  0
  5 49  1  0
  5 50  1  0
  6 51  1  0
  6 52  1  0
  7 53  1  0
  7 54  1  0
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 12 57  1  6
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 37 86  1  0
 38 87  1  0
 38 88  1  0
 39 89  1  0
 39 90  1  0
 39 91  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2R)-2-Hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl octanoic acid	HMDB

Chemical Formula

C₃₁H₅₂O₈

Average Molecular Weight

552.749

Monoisotopic Molecular Weight

552.366218634

IUPAC Name

(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl octanoate

Traditional Name

(2R)-2-hydroxy-3-{[(5Z)-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enoyl]oxy}propyl octanoate

CAS Registry Number

Not Available

SMILES

CCCCCCCC(=O)OC[C@@H](O)COC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C31H52O8/c1-3-5-7-8-13-17-30(36)38-22-25(33)23-39-31(37)18-14-10-9-12-16-26-27(29(35)21-28(26)34)20-19-24(32)15-11-6-4-2/h9,12,19-20,24-28,32-34H,3-8,10-11,13-18,21-23H2,1-2H3/b12-9-,20-19+/t24-,25+,26+,27+,28-/m0/s1

InChI Key

FHYNZVXVWCEUTF-QQOIVRHUSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Diradylglycerol
Diacylglycerol
1,3-acyl-sn-glycerol
Fatty alcohol
Glycerolipid
Fatty acid ester
Dicarboxylic acid or derivatives
Cyclopentanol
Cyclic alcohol
Cyclic ketone
Secondary alcohol
Ketone
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Endogenous (HMDB: HMDB0297117)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.84	ALOGPS
logP	5.42	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	13.47	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	24	ChemAxon
Refractivity	153.24 m³·mol⁻¹	ChemAxon
Polarizability	65.48 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	239.469	32859911
AllCCS	[M+H-H2O]+	238.44	32859911
AllCCS	[M+Na]+	240.649	32859911
AllCCS	[M+NH4]+	240.39	32859911
AllCCS	[M-H]-	229.399	32859911
AllCCS	[M+Na-2H]-	233.41	32859911
AllCCS	[M+HCOO]-	237.952	32859911
DeepCCS	[M+H]+	237.108	30932474
DeepCCS	[M-H]-	235.283	30932474
DeepCCS	[M-2H]-	268.525	30932474
DeepCCS	[M+Na]+	242.714	30932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
DG(8:0/0:0/PGD2),4TMS,isomer #1	CCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@@H]1C(/C=C/[C@H](CCCCC)O[Si](C)(C)C)=C(O[Si](C)(C)C)C[C@@H]1O[Si](C)(C)C)O[Si](C)(C)C	3964.7	Semi standard non polar	33892256
DG(8:0/0:0/PGD2),4TMS,isomer #1	CCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@@H]1C(/C=C/[C@H](CCCCC)O[Si](C)(C)C)=C(O[Si](C)(C)C)C[C@@H]1O[Si](C)(C)C)O[Si](C)(C)C	3543.0	Standard non polar	33892256
DG(8:0/0:0/PGD2),4TMS,isomer #1	CCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@@H]1C(/C=C/[C@H](CCCCC)O[Si](C)(C)C)=C(O[Si](C)(C)C)C[C@@H]1O[Si](C)(C)C)O[Si](C)(C)C	4273.0	Standard polar	33892256
DG(8:0/0:0/PGD2),4TMS,isomer #2	CCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C=C(O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C	3927.6	Semi standard non polar	33892256
DG(8:0/0:0/PGD2),4TMS,isomer #2	CCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C=C(O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C	3383.8	Standard non polar	33892256
DG(8:0/0:0/PGD2),4TMS,isomer #2	CCCCCCCC(=O)OC[C@H](COC(=O)CCC/C=C\C[C@H]1[C@@H](O[Si](C)(C)C)C=C(O[Si](C)(C)C)[C@@H]1/C=C/[C@H](CCCCC)O[Si](C)(C)C)O[Si](C)(C)C	4297.0	Standard polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(8:0/0:0/PGD2) 10V, Positive-QTOF	splash10-014r-0000090000-ad95c7c6a21f8b45ddc4	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(8:0/0:0/PGD2) 20V, Positive-QTOF	splash10-0a4i-5004930000-97cfda9750c1ac6d2250	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(8:0/0:0/PGD2) 40V, Positive-QTOF	splash10-06dl-9202000000-9669698540fc353afc2b	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(8:0/0:0/PGD2) 10V, Negative-QTOF	splash10-053r-3309480000-08604e9baa696717e1b9	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(8:0/0:0/PGD2) 20V, Negative-QTOF	splash10-000x-3209210000-dfe59d95e49e0d53a293	2021-10-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - DG(8:0/0:0/PGD2) 40V, Negative-QTOF	splash10-0fb9-6669100000-6622d18b411b0d72b82d	2021-10-21	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

157005224

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Not Available

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details

1. Diacylglycerol kinase theta

General function:: Involved in diacylglycerol kinase activity
Specific function:: Phosphorylates diacylglycerol (DAG) to generate phosphatidic acid (PA). May regulate the activity of protein kinase C by controlling the balance between these two signaling lipids. Activated in the nucleus in response to alpha-thrombin and nerve growth factor. May be involved in cAMP- induced activation of NR5A1 and subsequent steroidogenic gene transcription by delivering PA as ligand for NR5A1. Acts synergistically with NR5A1 on CYP17 transcriptional activity
Gene Name:: DGKQ
Uniprot ID:: P52824
Molecular weight:: 101154.0

Enzyme Details

2. Pancreatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Not Available
Gene Name:: PNLIP
Uniprot ID:: P16233
Molecular weight:: 51156.48

Enzyme Details

3. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB1
Uniprot ID:: Q9NQ66
Molecular weight:: 138565.805

Enzyme Details

4. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. This form has a role in retina signal transduction.
Gene Name:: PLCB4
Uniprot ID:: Q15147
Molecular weight:: 136105.065

Enzyme Details

5. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-2

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB2
Uniprot ID:: Q00722
Molecular weight:: 134023.21

Enzyme Details

6. Diacylglycerol kinase gamma

General function:: Involved in diacylglycerol kinase activity
Specific function:: Reverses the normal flow of glycerolipid biosynthesis by phosphorylating diacylglycerol back to phosphatidic acid
Gene Name:: DGKG
Uniprot ID:: P49619
Molecular weight:: 89095.3

Enzyme Details

7. Hepatic triacylglycerol lipase

General function:: Involved in catalytic activity
Specific function:: Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin.
Gene Name:: LIPC
Uniprot ID:: P11150
Molecular weight:: 55914.1

Enzyme Details

8. Lysosomal acid lipase/cholesteryl ester hydrolase

General function:: Involved in lipid metabolic process
Specific function:: Crucial for the intracellular hydrolysis of cholesteryl esters and triglycerides that have been internalized via receptor-mediated endocytosis of lipoprotein particles. Important in mediating the effect of LDL (low density lipoprotein) uptake on suppression of hydroxymethylglutaryl-CoA reductase and activation of endogenous cellular cholesteryl ester formation.
Gene Name:: LIPA
Uniprot ID:: P38571
Molecular weight:: 45418.71

Enzyme Details

9. 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3

General function:: Involved in calcium ion binding
Specific function:: The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
Gene Name:: PLCB3
Uniprot ID:: Q01970
Molecular weight:: 138797.725

Enzyme Details

10. Inactive pancreatic lipase-related protein 1

General function:: Involved in catalytic activity
Specific function:: May function as inhibitor of dietary triglyceride digestion. Lacks detectable lipase activity towards triglycerides, diglycerides, phosphatidylcholine, galactolipids or cholesterol esters (in vitro) (By similarity).
Gene Name:: PNLIPRP1
Uniprot ID:: P54315
Molecular weight:: Not Available

Transporters

Enzyme Details

1. Long-chain fatty acid transport protein 1

General function:: Lipid transport and metabolism
Specific function:: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:: SLC27A1
Uniprot ID:: Q6PCB7
Molecular weight:: 71107.5

Only showing the first 10 proteins. There are 132 proteins in total.

Show all enzymes and transporters

Showing metabocard for DG(8:0/0:0/PGD2) (HMDB0297117)

MOL for HMDB0297117 (DG(8:0/0:0/PGD2))

3D MOL for HMDB0297117 (DG(8:0/0:0/PGD2))

3D SDF for HMDB0297117 (DG(8:0/0:0/PGD2))

3D-SDF for HMDB0297117 (DG(8:0/0:0/PGD2))

PDB for HMDB0297117 (DG(8:0/0:0/PGD2))

3D PDB for HMDB0297117 (DG(8:0/0:0/PGD2))

SMILES for HMDB0297117 (DG(8:0/0:0/PGD2))

INCHI for HMDB0297117 (DG(8:0/0:0/PGD2))

Structure for HMDB0297117 (DG(8:0/0:0/PGD2))

3D Structure for HMDB0297117 (DG(8:0/0:0/PGD2))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Derivatized

MS/MS Spectra

Enzymes

Transporters