Showing metabocard for Ganglioside GD1b (d18:0/18:1(9Z)) (HMDB0011812)
| Record Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Version | 5.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Status | Expected but not Quantified | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Creation Date | 2009-03-24 16:17:23 UTC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Update Date | 2022-11-30 19:04:02 UTC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HMDB ID | HMDB0011812 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Secondary Accession Numbers |
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| Metabolite Identification | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Common Name | Ganglioside GD1b (d18:0/18:1(9Z)) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description | Ganglioside GD1b (d18:0/18:1(9Z)) is a ganglioside. A ganglioside is a compound composed of a glycosphingolipid (ceramide and oligosaccharide) with one or more sialic acids (AKA n-acetylneuraminic acid, NANA) linked on the sugar chain. The 60+ known gangliosides differ mainly in the position and number of NANA residues. It is a component of the cell plasma membrane that modulates cell signal transduction events. It appears that they concentrate in lipid rafts. They have recently been found to be highly important in immunology. Natural and semisynthetic gangliosides are considered possible therapeutics for neurodegenerative disorders. Gangliosides are more complex glycosphingolipids in which oligosaccharide chains containing N-acetylneuraminic acid (NeuNAc) are attached to a ceramide. NeuNAc, an acetylated derivative of the carbohydrate sialic acid, makes the head groups of Gangliosides anionic. NB: the M in GM2 stands for monosialo, i.e., one NeuNAc residue. GM2 is the second monosialo ganglioside characterized, thus the subscript 2. Their structural diversity results from variation in the composition and sequence of the sugar residues. In all Gangliosides, the ceramide is linked through its C-1 to a beta-glucosyl residue, which, in turn, is bound to a beta-galactosyl residue. (Wikipedia) Particularly, Ganglioside GD1b (d18:0/18:1(9Z)) is a GD1b ganglioside, a glycosphingolipid (ceramide and oligosaccharide) or oligoglycosylceramide with one or more sialic acids (i.e. n-acetylneuraminic acid) linked on the sugar chain. It is a component the cell plasma membrane which modulates cell signal transduction events. Gangliosides have been found to be highly important in immunology. Ganglioside GD3 carries a net-negative charge at pH 7.0 and is acidic. Gangliosides can amount to 6% of the weight of lipids from brain, but they are found at low levels in all animal tissues. Gangliosides are glycosphingolipids. There are four types of glycosphingolipids, the cerebrosides, sulfatides, globosides and gangliosides. Gangliosides are very similar to globosides except that they also contain N-acetyl neuraminic acid (NANA) in varying amounts. The specific names for the gangliosides provide information about their structure. The letter G refers to ganglioside, and the subscripts M, D, T and Q indicate that the molecule contains mono-, di-, tri and quatra-sialic acid. The numbered subscripts 1, 2 and 3 refer to the carbohydrate sequence that is attached to the ceramide. In particular, 1 stands for GalGalNAcGalGlc-ceramide, 2 stands for GalNAcGalGlc-ceramide and 3 stands for GalGlc-ceramide. Deficiencies in lysosomal enzymes that degrade the carbohydrate portions of various gangliosides are responsible for a number of lysosomal storage diseases such as Tay-Sachs disease, Sandhoff disease, and GM1 gangliosidosis. The carbohydrate portion of the ganglioside GM1 is the site of attachment of cholera toxin, the protein secreted by Vibrio cholerae. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Structure | MOL for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))
Mrv0541 02241202042D
127132 0 0 1 0 999 V2000
4.1312 -15.0710 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.4167 -14.6585 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
2.7023 -15.0710 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
3.4167 -13.8335 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
4.1312 -13.4210 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
4.8457 -13.8335 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
5.5601 -13.4210 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.5601 -12.5960 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
4.8457 -12.1835 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.1312 -12.5960 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.4167 -12.1835 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
3.4167 -11.3585 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
2.6781 -10.9320 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1.9394 -11.3585 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.1554 -10.9320 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.7023 -12.5960 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.7589 -11.8704 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
6.4795 -11.5137 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.0582 -11.3225 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.4100 -12.3686 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.8457 -14.6585 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.0112 -10.3283 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
10.0093 -11.1533 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
10.7228 -11.5674 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
9.2939 -11.5642 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
8.5804 -11.1500 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
8.5823 -10.3250 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
7.8688 -9.9109 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.1534 -10.3218 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.1515 -11.1468 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
7.8650 -11.5609 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.8631 -12.3859 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.1477 -12.7968 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.1457 -13.6497 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.8833 -14.0778 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
8.5766 -12.8000 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.4642 -10.0437 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.9175 -10.5090 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.2621 -9.1115 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
7.2528 -9.3756 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
9.2977 -9.9142 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
7.8003 -6.4962 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
8.0988 -7.2653 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
7.5819 -7.9084 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.8805 -8.6775 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
8.6958 -8.8035 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
9.2126 -8.1604 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
8.9141 -7.3913 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.0279 -8.2864 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
8.9943 -9.5726 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.7205 -7.7561 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
8.3566 -5.8732 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
11.0783 -7.0139 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
11.3667 -7.7869 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
10.8416 -8.4231 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
11.1300 -9.1961 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
11.9436 -9.3327 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
12.4687 -8.6965 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
12.1804 -7.9235 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
13.2824 -8.8332 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
12.2320 -10.1057 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.6048 -9.8323 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.2647 -6.8772 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.9547 -4.9079 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
6.4850 -5.5861 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
5.6628 -5.5185 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
5.1932 -6.1967 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
5.5457 -6.9426 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
6.3680 -7.0103 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
6.8376 -6.3320 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.0751 -7.5929 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3709 -6.1291 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.3102 -4.7726 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.6022 -4.1620 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.2545 -7.5081 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.7708 -8.1765 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.9175 -6.7551 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.5980 -3.2803 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
4.1300 -3.9598 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
3.3076 -3.8941 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
2.8397 -4.5735 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
3.1941 -5.3186 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
4.0165 -5.3842 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
4.4845 -4.7047 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.7261 -5.9980 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.0173 -4.5080 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.9533 -3.1491 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.2437 -2.5353 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
14.0012 -9.2382 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
14.7113 -8.8183 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
15.4301 -9.2233 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
16.1402 -8.8033 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
16.8590 -9.2083 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
17.5691 -8.7883 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.2879 -9.1933 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.9980 -8.7733 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
19.7167 -9.1782 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
20.4268 -8.7582 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.1456 -9.1632 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.8558 -8.7433 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
22.5746 -9.1482 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
23.2846 -8.7283 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
24.0035 -9.1333 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
24.7135 -8.7133 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
25.4323 -9.1183 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
15.4386 -10.0483 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
14.7026 -7.9933 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
26.1425 -8.6984 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
27.5634 -7.5896 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
26.8486 -8.0017 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
26.1345 -7.5886 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
25.4197 -8.0006 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
24.7056 -7.5877 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
23.9907 -7.9997 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
23.2766 -7.5867 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
22.5618 -7.9987 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.8476 -7.5857 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.1332 -7.5852 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
20.4184 -7.9972 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
19.7042 -7.5842 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.9894 -7.9962 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.2753 -7.5832 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
17.5605 -7.9953 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
16.8463 -7.5823 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
16.1316 -7.9943 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
15.4174 -7.5813 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
15.4180 -6.7563 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 2 0 0 0 0
2 4 1 0 0 0 0
5 4 1 1 0 0 0
5 6 1 0 0 0 0
5 10 1 0 0 0 0
6 7 1 0 0 0 0
6 21 1 6 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
8 17 1 1 0 0 0
8 20 1 6 0 0 0
9 10 1 0 0 0 0
10 11 1 0 0 0 0
11 12 1 0 0 0 0
11 16 1 6 0 0 0
12 13 1 0 0 0 0
12 15 1 1 0 0 0
13 14 1 0 0 0 0
17 18 2 0 0 0 0
17 19 1 0 0 0 0
22 23 1 0 0 0 0
23 24 2 0 0 0 0
23 25 1 0 0 0 0
26 25 1 1 0 0 0
26 27 1 0 0 0 0
26 31 1 0 0 0 0
27 28 1 0 0 0 0
27 41 1 6 0 0 0
28 29 1 0 0 0 0
29 30 1 0 0 0 0
29 37 1 1 0 0 0
29 40 1 6 0 0 0
30 31 1 0 0 0 0
31 32 1 0 0 0 0
32 33 1 0 0 0 0
32 36 1 6 0 0 0
33 34 1 0 0 0 0
33 20 1 1 0 0 0
34 35 1 0 0 0 0
37 38 2 0 0 0 0
37 39 1 0 0 0 0
43 42 1 1 0 0 0
42 52 1 0 0 0 0
43 44 1 0 0 0 0
43 48 1 0 0 0 0
44 45 1 0 0 0 0
44 51 1 1 0 0 0
45 46 1 0 0 0 0
45 40 1 1 0 0 0
46 47 1 0 0 0 0
46 50 1 6 0 0 0
47 48 1 0 0 0 0
47 49 1 1 0 0 0
54 53 1 1 0 0 0
53 63 1 0 0 0 0
54 55 1 0 0 0 0
54 59 1 0 0 0 0
55 56 1 0 0 0 0
55 49 1 6 0 0 0
56 57 1 0 0 0 0
56 62 1 1 0 0 0
57 58 1 0 0 0 0
57 61 1 6 0 0 0
58 59 1 0 0 0 0
58 60 1 1 0 0 0
65 64 1 1 0 0 0
64 74 1 0 0 0 0
65 66 1 0 0 0 0
65 70 1 0 0 0 0
66 67 1 0 0 0 0
66 73 1 1 0 0 0
67 68 1 0 0 0 0
67 72 1 1 0 0 0
68 69 1 0 0 0 0
68 71 1 6 0 0 0
69 70 1 0 0 0 0
69 51 1 1 0 0 0
75 71 1 0 0 0 0
76 75 1 0 0 0 0
77 75 2 0 0 0 0
79 78 1 1 0 0 0
78 88 1 0 0 0 0
79 80 1 0 0 0 0
79 84 1 0 0 0 0
80 81 1 0 0 0 0
80 87 1 1 0 0 0
81 82 1 0 0 0 0
81 86 1 1 0 0 0
82 83 1 0 0 0 0
82 85 1 6 0 0 0
83 84 1 0 0 0 0
83 72 1 1 0 0 0
89 60 1 0 0 0 0
90 89 1 0 0 0 0
91 90 1 0 0 0 0
92 91 1 0 0 0 0
93 92 1 0 0 0 0
94 93 1 0 0 0 0
95 94 1 0 0 0 0
96 95 1 0 0 0 0
97 96 1 0 0 0 0
98 97 1 0 0 0 0
99 98 1 0 0 0 0
100 99 1 0 0 0 0
101100 1 0 0 0 0
102101 1 0 0 0 0
103102 1 0 0 0 0
104103 1 0 0 0 0
105104 1 0 0 0 0
91106 1 1 0 0 0
90107 1 6 0 0 0
108105 1 0 0 0 0
110109 1 0 0 0 0
111110 1 0 0 0 0
112111 1 0 0 0 0
113112 1 0 0 0 0
114113 1 0 0 0 0
115114 1 0 0 0 0
116115 1 0 0 0 0
117116 1 0 0 0 0
118117 2 0 0 0 0
119118 1 0 0 0 0
120119 1 0 0 0 0
121120 1 0 0 0 0
122121 1 0 0 0 0
123122 1 0 0 0 0
124123 1 0 0 0 0
125124 1 0 0 0 0
126125 1 0 0 0 0
127126 2 0 0 0 0
107126 1 0 0 0 0
M END
3D MOL for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))HMDB0011812
RDKit 3D
Ganglioside GD1b (d18:0/18:1(9Z))
276281 0 0 0 0 0 0 0 0999 V2000
-4.0239 -2.2490 7.3860 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.1085 -1.2218 7.2254 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.6497 -1.1303 5.8268 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.2459 -2.4989 5.4021 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.7795 -2.3174 4.0180 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.4522 -3.4767 3.4478 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.8428 -4.7388 3.0940 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.1030 -5.5275 4.1288 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7732 -6.8833 3.5707 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.5994 -7.3776 3.4164 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.2989 -6.7656 3.7306 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.4379 -6.6994 2.4659 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.0512 -6.1418 2.7180 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.3797 -6.1817 1.3510 C 0 0 0 0 0 0 0 0 0 0 0 0
1.0287 -5.7155 1.3199 C 0 0 0 0 0 0 0 0 0 0 0 0
1.2332 -4.3161 1.7583 C 0 0 0 0 0 0 0 0 0 0 0 0
2.6018 -3.7613 1.7394 C 0 0 0 0 0 0 0 0 0 0 0 0
3.2557 -3.6760 0.4127 C 0 0 0 0 0 0 0 0 0 0 0 0
2.7110 -4.2340 -0.5600 O 0 0 0 0 0 0 0 0 0 0 0 0
4.4566 -2.9834 0.2379 N 0 0 0 0 0 0 0 0 0 0 0 0
5.2272 -2.7607 -0.9506 C 0 0 1 0 0 0 0 0 0 0 0 0
5.4941 -1.2797 -1.1437 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3874 -0.5293 -1.3464 O 0 0 0 0 0 0 0 0 0 0 0 0
3.7776 -0.4861 -2.5506 C 0 0 2 0 0 0 0 0 0 0 0 0
3.5881 0.7985 -3.0472 O 0 0 0 0 0 0 0 0 0 0 0 0
2.2495 1.2307 -2.9606 C 0 0 2 0 0 0 0 0 0 0 0 0
2.2097 2.7336 -3.1869 C 0 0 0 0 0 0 0 0 0 0 0 0
0.8951 3.1372 -3.1350 O 0 0 0 0 0 0 0 0 0 0 0 0
1.6952 0.8239 -1.6567 C 0 0 1 0 0 0 0 0 0 0 0 0
0.5085 1.4317 -1.2476 O 0 0 0 0 0 0 0 0 0 0 0 0
0.6799 2.1269 -0.0687 C 0 0 2 0 0 0 0 0 0 0 0 0
0.2845 1.2823 1.0494 O 0 0 0 0 0 0 0 0 0 0 0 0
1.1790 1.6795 2.0385 C 0 0 2 0 0 0 0 0 0 0 0 0
1.0224 1.0165 3.3617 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.2337 1.2615 3.8866 O 0 0 0 0 0 0 0 0 0 0 0 0
1.0109 3.2062 2.2269 C 0 0 2 0 0 0 0 0 0 0 0 0
1.3215 3.5153 3.5180 O 0 0 0 0 0 0 0 0 0 0 0 0
2.4514 4.3301 3.5616 C 0 0 2 0 0 0 0 0 0 0 0 0
3.5726 3.4745 3.9057 O 0 0 0 0 0 0 0 0 0 0 0 0
4.6720 4.1131 3.3301 C 0 0 2 0 0 0 0 0 0 0 0 0
5.8508 3.2438 3.1058 C 0 0 0 0 0 0 0 0 0 0 0 0
6.8752 4.0196 2.5319 O 0 0 0 0 0 0 0 0 0 0 0 0
4.9147 5.3464 4.1709 C 0 0 2 0 0 0 0 0 0 0 0 0
6.1001 5.1627 4.8796 O 0 0 0 0 0 0 0 0 0 0 0 0
3.7996 5.5175 5.1887 C 0 0 2 0 0 0 0 0 0 0 0 0
3.9605 4.4238 6.0716 O 0 0 0 0 0 0 0 0 0 0 0 0
4.2158 4.7692 7.3683 C 0 0 2 0 0 0 0 0 0 0 0 0
5.3895 4.2807 7.8778 O 0 0 0 0 0 0 0 0 0 0 0 0
5.4585 2.9362 8.1106 C 0 0 2 0 0 0 0 0 0 0 0 0
5.2657 2.0460 6.9235 C 0 0 0 0 0 0 0 0 0 0 0 0
5.3571 0.7048 7.3767 O 0 0 0 0 0 0 0 0 0 0 0 0
4.5780 2.5767 9.2722 C 0 0 2 0 0 0 0 0 0 0 0 0
3.9631 1.3304 9.0966 O 0 0 0 0 0 0 0 0 0 0 0 0
3.5219 3.6267 9.5047 C 0 0 2 0 0 0 0 0 0 0 0 0
2.4046 2.9556 10.0407 O 0 0 0 0 0 0 0 0 0 0 0 0
3.0691 4.2711 8.2276 C 0 0 1 0 0 0 0 0 0 0 0 0
2.2752 5.3672 8.5818 O 0 0 0 0 0 0 0 0 0 0 0 0
2.4333 5.4250 4.5347 C 0 0 1 0 0 0 0 0 0 0 0 0
1.9197 6.7257 4.0053 C 0 0 0 0 0 0 0 0 0 0 0 0
2.6345 7.3332 2.8921 C 0 0 0 0 0 0 0 0 0 0 0 0
2.4983 6.9838 1.4505 C 0 0 0 0 0 0 0 0 0 0 0 0
3.4502 8.2412 3.1322 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.3159 3.5522 1.6696 C 0 0 2 0 0 0 0 0 0 0 0 0
-1.3068 2.7480 2.1002 O 0 0 0 0 0 0 0 0 0 0 0 0
-2.5684 3.1842 2.2919 C 0 0 2 0 0 0 0 0 0 0 0 0
-2.5650 4.3581 3.2493 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.6103 4.9614 3.5774 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.3828 4.7885 3.7844 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.4547 2.1660 2.9751 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.9157 2.4844 2.9199 C 0 0 2 0 0 0 0 0 0 0 0 0
-5.6002 1.3144 3.2671 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.3563 2.9343 1.4951 C 0 0 1 0 0 0 0 0 0 0 0 0
-5.9919 4.2119 1.5776 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.3898 4.3998 1.6734 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.9871 5.7418 1.7578 C 0 0 0 0 0 0 0 0 0 0 0 0
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M END
3D SDF for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))
Mrv0541 02241202042D
127132 0 0 1 0 999 V2000
4.1312 -15.0710 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.4167 -14.6585 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
2.7023 -15.0710 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
3.4167 -13.8335 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
4.1312 -13.4210 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
4.8457 -13.8335 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
5.5601 -13.4210 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
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4.8457 -12.1835 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
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2.6781 -10.9320 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
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5.7589 -11.8704 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
6.4795 -11.5137 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
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10.0112 -10.3283 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
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10.7228 -11.5674 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
9.2939 -11.5642 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
8.5804 -11.1500 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
8.5823 -10.3250 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
7.8688 -9.9109 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.1534 -10.3218 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.1515 -11.1468 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
7.8650 -11.5609 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.8631 -12.3859 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.1477 -12.7968 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.1457 -13.6497 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.8833 -14.0778 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
8.5766 -12.8000 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.4642 -10.0437 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.9175 -10.5090 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.2621 -9.1115 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
7.2528 -9.3756 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
9.2977 -9.9142 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
7.8003 -6.4962 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
8.0988 -7.2653 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
7.5819 -7.9084 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
7.8805 -8.6775 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
8.6958 -8.8035 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
9.2126 -8.1604 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
8.9141 -7.3913 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.0279 -8.2864 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
8.9943 -9.5726 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.7205 -7.7561 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
8.3566 -5.8732 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
11.0783 -7.0139 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
11.3667 -7.7869 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
10.8416 -8.4231 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
11.1300 -9.1961 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
11.9436 -9.3327 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
12.4687 -8.6965 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
12.1804 -7.9235 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
13.2824 -8.8332 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
12.2320 -10.1057 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.6048 -9.8323 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
10.2647 -6.8772 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.9547 -4.9079 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
6.4850 -5.5861 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
5.6628 -5.5185 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
5.1932 -6.1967 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
5.5457 -6.9426 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
6.3680 -7.0103 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
6.8376 -6.3320 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.0751 -7.5929 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3709 -6.1291 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
5.3102 -4.7726 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
6.6022 -4.1620 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.2545 -7.5081 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.7708 -8.1765 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.9175 -6.7551 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.5980 -3.2803 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
4.1300 -3.9598 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
3.3076 -3.8941 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
2.8397 -4.5735 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
3.1941 -5.3186 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0
4.0165 -5.3842 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
4.4845 -4.7047 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.7261 -5.9980 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.0173 -4.5080 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
2.9533 -3.1491 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
4.2437 -2.5353 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
14.0012 -9.2382 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
14.7113 -8.8183 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
15.4301 -9.2233 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0
16.1402 -8.8033 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
16.8590 -9.2083 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
17.5691 -8.7883 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.2879 -9.1933 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.9980 -8.7733 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
19.7167 -9.1782 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
20.4268 -8.7582 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.1456 -9.1632 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.8558 -8.7433 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
22.5746 -9.1482 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
23.2846 -8.7283 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
24.0035 -9.1333 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
24.7135 -8.7133 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
25.4323 -9.1183 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
15.4386 -10.0483 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
14.7026 -7.9933 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0
26.1425 -8.6984 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
27.5634 -7.5896 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
26.8486 -8.0017 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
26.1345 -7.5886 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
25.4197 -8.0006 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
24.7056 -7.5877 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
23.9907 -7.9997 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
23.2766 -7.5867 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
22.5618 -7.9987 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.8476 -7.5857 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
21.1332 -7.5852 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
20.4184 -7.9972 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
19.7042 -7.5842 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.9894 -7.9962 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
18.2753 -7.5832 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
17.5605 -7.9953 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
16.8463 -7.5823 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
16.1316 -7.9943 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
15.4174 -7.5813 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
15.4180 -6.7563 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 2 0 0 0 0
2 4 1 0 0 0 0
5 4 1 1 0 0 0
5 6 1 0 0 0 0
5 10 1 0 0 0 0
6 7 1 0 0 0 0
6 21 1 6 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
8 17 1 1 0 0 0
8 20 1 6 0 0 0
9 10 1 0 0 0 0
10 11 1 0 0 0 0
11 12 1 0 0 0 0
11 16 1 6 0 0 0
12 13 1 0 0 0 0
12 15 1 1 0 0 0
13 14 1 0 0 0 0
17 18 2 0 0 0 0
17 19 1 0 0 0 0
22 23 1 0 0 0 0
23 24 2 0 0 0 0
23 25 1 0 0 0 0
26 25 1 1 0 0 0
26 27 1 0 0 0 0
26 31 1 0 0 0 0
27 28 1 0 0 0 0
27 41 1 6 0 0 0
28 29 1 0 0 0 0
29 30 1 0 0 0 0
29 37 1 1 0 0 0
29 40 1 6 0 0 0
30 31 1 0 0 0 0
31 32 1 0 0 0 0
32 33 1 0 0 0 0
32 36 1 6 0 0 0
33 34 1 0 0 0 0
33 20 1 1 0 0 0
34 35 1 0 0 0 0
37 38 2 0 0 0 0
37 39 1 0 0 0 0
43 42 1 1 0 0 0
42 52 1 0 0 0 0
43 44 1 0 0 0 0
43 48 1 0 0 0 0
44 45 1 0 0 0 0
44 51 1 1 0 0 0
45 46 1 0 0 0 0
45 40 1 1 0 0 0
46 47 1 0 0 0 0
46 50 1 6 0 0 0
47 48 1 0 0 0 0
47 49 1 1 0 0 0
54 53 1 1 0 0 0
53 63 1 0 0 0 0
54 55 1 0 0 0 0
54 59 1 0 0 0 0
55 56 1 0 0 0 0
55 49 1 6 0 0 0
56 57 1 0 0 0 0
56 62 1 1 0 0 0
57 58 1 0 0 0 0
57 61 1 6 0 0 0
58 59 1 0 0 0 0
58 60 1 1 0 0 0
65 64 1 1 0 0 0
64 74 1 0 0 0 0
65 66 1 0 0 0 0
65 70 1 0 0 0 0
66 67 1 0 0 0 0
66 73 1 1 0 0 0
67 68 1 0 0 0 0
67 72 1 1 0 0 0
68 69 1 0 0 0 0
68 71 1 6 0 0 0
69 70 1 0 0 0 0
69 51 1 1 0 0 0
75 71 1 0 0 0 0
76 75 1 0 0 0 0
77 75 2 0 0 0 0
79 78 1 1 0 0 0
78 88 1 0 0 0 0
79 80 1 0 0 0 0
79 84 1 0 0 0 0
80 81 1 0 0 0 0
80 87 1 1 0 0 0
81 82 1 0 0 0 0
81 86 1 1 0 0 0
82 83 1 0 0 0 0
82 85 1 6 0 0 0
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83 72 1 1 0 0 0
89 60 1 0 0 0 0
90 89 1 0 0 0 0
91 90 1 0 0 0 0
92 91 1 0 0 0 0
93 92 1 0 0 0 0
94 93 1 0 0 0 0
95 94 1 0 0 0 0
96 95 1 0 0 0 0
97 96 1 0 0 0 0
98 97 1 0 0 0 0
99 98 1 0 0 0 0
100 99 1 0 0 0 0
101100 1 0 0 0 0
102101 1 0 0 0 0
103102 1 0 0 0 0
104103 1 0 0 0 0
105104 1 0 0 0 0
91106 1 1 0 0 0
90107 1 6 0 0 0
108105 1 0 0 0 0
110109 1 0 0 0 0
111110 1 0 0 0 0
112111 1 0 0 0 0
113112 1 0 0 0 0
114113 1 0 0 0 0
115114 1 0 0 0 0
116115 1 0 0 0 0
117116 1 0 0 0 0
118117 2 0 0 0 0
119118 1 0 0 0 0
120119 1 0 0 0 0
121120 1 0 0 0 0
122121 1 0 0 0 0
123122 1 0 0 0 0
124123 1 0 0 0 0
125124 1 0 0 0 0
126125 1 0 0 0 0
127126 2 0 0 0 0
107126 1 0 0 0 0
M END
> <DATABASE_ID>
HMDB0011812
> <DATABASE_NAME>
hmdb
> <SMILES>
CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3CC(C)=O)[C@H](O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)C(O3)[C@H](O)[C@@H](CO)O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)C(O3)[C@H](O)[C@H](O)CO)C(O)=O)C(O)=O)[C@H]2O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC\C=C/CCCCCCCC
> <INCHI_IDENTIFIER>
InChI=1S/C85H149N3O39/c1-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-60(102)88-50(51(98)34-32-30-28-26-24-22-19-17-15-13-11-9-7-2)45-116-79-70(110)68(108)73(58(43-93)119-79)122-81-71(111)77(74(59(44-94)120-81)123-78-49(36-46(3)95)72(65(105)56(41-91)117-78)121-80-69(109)67(107)64(104)55(40-90)118-80)127-85(83(114)115)38-53(100)62(87-48(5)97)76(126-85)66(106)57(42-92)124-84(82(112)113)37-52(99)61(86-47(4)96)75(125-84)63(103)54(101)39-89/h20-21,49-59,61-81,89-94,98-101,103-111H,6-19,22-45H2,1-5H3,(H,86,96)(H,87,97)(H,88,102)(H,112,113)(H,114,115)/b21-20-/t49-,50+,51-,52+,53+,54-,55-,56-,57-,58-,59-,61-,62-,63-,64+,65+,66-,67+,68-,69-,70-,71-,72-,73-,74+,75?,76?,77-,78+,79-,80+,81+,84-,85+/m1/s1
> <INCHI_KEY>
UJPVYNCJBULENX-AOMPNTDKSA-N
> <FORMULA>
C85H149N3O39
> <MOLECULAR_WEIGHT>
1837.0893
> <EXACT_MASS>
1835.976822041
> <JCHEM_ACCEPTOR_COUNT>
39
> <JCHEM_AVERAGE_POLARIZABILITY>
198.1253345918998
> <JCHEM_BIOAVAILABILITY>
0
> <JCHEM_DONOR_COUNT>
24
> <JCHEM_FORMAL_CHARGE>
0
> <JCHEM_GHOSE_FILTER>
0
> <JCHEM_IUPAC>
(2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-{[(2S,3R)-3-hydroxy-2-[(9Z)-octadec-9-enamido]octadecyl]oxy}-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-5-acetamido-4-hydroxyoxane-2-carboxylic acid
> <ALOGPS_LOGP>
1.27
> <JCHEM_LOGP>
0.43951689166666874
> <ALOGPS_LOGS>
-3.58
> <JCHEM_MDDR_LIKE_RULE>
1
> <JCHEM_NUMBER_OF_RINGS>
6
> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2
> <JCHEM_PKA>
3.1250382090686446
> <JCHEM_PKA_STRONGEST_ACIDIC>
2.4576634471943666
> <JCHEM_PKA_STRONGEST_BASIC>
-3.685478686053642
> <JCHEM_POLAR_SURFACE_AREA>
674.1000000000004
> <JCHEM_REFRACTIVITY>
438.2574999999998
> <JCHEM_ROTATABLE_BOND_COUNT>
60
> <JCHEM_RULE_OF_FIVE>
0
> <ALOGPS_SOLUBILITY>
4.80e-01 g/l
> <JCHEM_TRADITIONAL_IUPAC>
(2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-{[(2S,3R)-3-hydroxy-2-[(9Z)-octadec-9-enamido]octadecyl]oxy}-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-5-acetamido-4-hydroxyoxane-2-carboxylic acid
> <JCHEM_VEBER_RULE>
0
$$$$
3D-SDF for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))HMDB0011812
RDKit 3D
Ganglioside GD1b (d18:0/18:1(9Z))
276281 0 0 0 0 0 0 0 0999 V2000
-4.0239 -2.2490 7.3860 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.1085 -1.2218 7.2254 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.6497 -1.1303 5.8268 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.2459 -2.4989 5.4021 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.7795 -2.3174 4.0180 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.4522 -3.4767 3.4478 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.8428 -4.7388 3.0940 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.1030 -5.5275 4.1288 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.7732 -6.8833 3.5707 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.5994 -7.3776 3.4164 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.2989 -6.7656 3.7306 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.4379 -6.6994 2.4659 C 0 0 0 0 0 0 0 0 0 0 0 0
-1.0512 -6.1418 2.7180 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.3797 -6.1817 1.3510 C 0 0 0 0 0 0 0 0 0 0 0 0
1.0287 -5.7155 1.3199 C 0 0 0 0 0 0 0 0 0 0 0 0
1.2332 -4.3161 1.7583 C 0 0 0 0 0 0 0 0 0 0 0 0
2.6018 -3.7613 1.7394 C 0 0 0 0 0 0 0 0 0 0 0 0
3.2557 -3.6760 0.4127 C 0 0 0 0 0 0 0 0 0 0 0 0
2.7110 -4.2340 -0.5600 O 0 0 0 0 0 0 0 0 0 0 0 0
4.4566 -2.9834 0.2379 N 0 0 0 0 0 0 0 0 0 0 0 0
5.2272 -2.7607 -0.9506 C 0 0 1 0 0 0 0 0 0 0 0 0
5.4941 -1.2797 -1.1437 C 0 0 0 0 0 0 0 0 0 0 0 0
4.3874 -0.5293 -1.3464 O 0 0 0 0 0 0 0 0 0 0 0 0
3.7776 -0.4861 -2.5506 C 0 0 2 0 0 0 0 0 0 0 0 0
3.5881 0.7985 -3.0472 O 0 0 0 0 0 0 0 0 0 0 0 0
2.2495 1.2307 -2.9606 C 0 0 2 0 0 0 0 0 0 0 0 0
2.2097 2.7336 -3.1869 C 0 0 0 0 0 0 0 0 0 0 0 0
0.8951 3.1372 -3.1350 O 0 0 0 0 0 0 0 0 0 0 0 0
1.6952 0.8239 -1.6567 C 0 0 1 0 0 0 0 0 0 0 0 0
0.5085 1.4317 -1.2476 O 0 0 0 0 0 0 0 0 0 0 0 0
0.6799 2.1269 -0.0687 C 0 0 2 0 0 0 0 0 0 0 0 0
0.2845 1.2823 1.0494 O 0 0 0 0 0 0 0 0 0 0 0 0
1.1790 1.6795 2.0385 C 0 0 2 0 0 0 0 0 0 0 0 0
1.0224 1.0165 3.3617 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.2337 1.2615 3.8866 O 0 0 0 0 0 0 0 0 0 0 0 0
1.0109 3.2062 2.2269 C 0 0 2 0 0 0 0 0 0 0 0 0
1.3215 3.5153 3.5180 O 0 0 0 0 0 0 0 0 0 0 0 0
2.4514 4.3301 3.5616 C 0 0 2 0 0 0 0 0 0 0 0 0
3.5726 3.4745 3.9057 O 0 0 0 0 0 0 0 0 0 0 0 0
4.6720 4.1131 3.3301 C 0 0 2 0 0 0 0 0 0 0 0 0
5.8508 3.2438 3.1058 C 0 0 0 0 0 0 0 0 0 0 0 0
6.8752 4.0196 2.5319 O 0 0 0 0 0 0 0 0 0 0 0 0
4.9147 5.3464 4.1709 C 0 0 2 0 0 0 0 0 0 0 0 0
6.1001 5.1627 4.8796 O 0 0 0 0 0 0 0 0 0 0 0 0
3.7996 5.5175 5.1887 C 0 0 2 0 0 0 0 0 0 0 0 0
3.9605 4.4238 6.0716 O 0 0 0 0 0 0 0 0 0 0 0 0
4.2158 4.7692 7.3683 C 0 0 2 0 0 0 0 0 0 0 0 0
5.3895 4.2807 7.8778 O 0 0 0 0 0 0 0 0 0 0 0 0
5.4585 2.9362 8.1106 C 0 0 2 0 0 0 0 0 0 0 0 0
5.2657 2.0460 6.9235 C 0 0 0 0 0 0 0 0 0 0 0 0
5.3571 0.7048 7.3767 O 0 0 0 0 0 0 0 0 0 0 0 0
4.5780 2.5767 9.2722 C 0 0 2 0 0 0 0 0 0 0 0 0
3.9631 1.3304 9.0966 O 0 0 0 0 0 0 0 0 0 0 0 0
3.5219 3.6267 9.5047 C 0 0 2 0 0 0 0 0 0 0 0 0
2.4046 2.9556 10.0407 O 0 0 0 0 0 0 0 0 0 0 0 0
3.0691 4.2711 8.2276 C 0 0 1 0 0 0 0 0 0 0 0 0
2.2752 5.3672 8.5818 O 0 0 0 0 0 0 0 0 0 0 0 0
2.4333 5.4250 4.5347 C 0 0 1 0 0 0 0 0 0 0 0 0
1.9197 6.7257 4.0053 C 0 0 0 0 0 0 0 0 0 0 0 0
2.6345 7.3332 2.8921 C 0 0 0 0 0 0 0 0 0 0 0 0
2.4983 6.9838 1.4505 C 0 0 0 0 0 0 0 0 0 0 0 0
3.4502 8.2412 3.1322 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.3159 3.5522 1.6696 C 0 0 2 0 0 0 0 0 0 0 0 0
-1.3068 2.7480 2.1002 O 0 0 0 0 0 0 0 0 0 0 0 0
-2.5684 3.1842 2.2919 C 0 0 2 0 0 0 0 0 0 0 0 0
-2.5650 4.3581 3.2493 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.6103 4.9614 3.5774 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.3828 4.7885 3.7844 O 0 0 0 0 0 0 0 0 0 0 0 0
-3.4547 2.1660 2.9751 C 0 0 0 0 0 0 0 0 0 0 0 0
-4.9157 2.4844 2.9199 C 0 0 2 0 0 0 0 0 0 0 0 0
-5.6002 1.3144 3.2671 O 0 0 0 0 0 0 0 0 0 0 0 0
-5.3563 2.9343 1.4951 C 0 0 1 0 0 0 0 0 0 0 0 0
-5.9919 4.2119 1.5776 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.3898 4.3998 1.6734 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.9871 5.7418 1.7578 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.1353 3.3932 1.6874 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.1750 2.7857 0.6456 C 0 0 0 0 0 0 0 0 0 0 0 0
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M END
PDB for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))HEADER PROTEIN 24-FEB-12 NONE TITLE NULL COMPND NULL SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 24-FEB-12 0 HETATM 1 C UNK 0 7.712 -28.133 0.000 0.00 0.00 C+0 HETATM 2 C UNK 0 6.378 -27.363 0.000 0.00 0.00 C+0 HETATM 3 O UNK 0 5.044 -28.133 0.000 0.00 0.00 O+0 HETATM 4 N UNK 0 6.378 -25.823 0.000 0.00 0.00 N+0 HETATM 5 C UNK 0 7.712 -25.053 0.000 0.00 0.00 C+0 HETATM 6 C UNK 0 9.045 -25.823 0.000 0.00 0.00 C+0 HETATM 7 C UNK 0 10.379 -25.053 0.000 0.00 0.00 C+0 HETATM 8 C UNK 0 10.379 -23.513 0.000 0.00 0.00 C+0 HETATM 9 O UNK 0 9.045 -22.743 0.000 0.00 0.00 O+0 HETATM 10 C UNK 0 7.712 -23.513 0.000 0.00 0.00 C+0 HETATM 11 C UNK 0 6.378 -22.743 0.000 0.00 0.00 C+0 HETATM 12 C UNK 0 6.378 -21.203 0.000 0.00 0.00 C+0 HETATM 13 C UNK 0 4.999 -20.406 0.000 0.00 0.00 C+0 HETATM 14 O UNK 0 3.620 -21.203 0.000 0.00 0.00 O+0 HETATM 15 O UNK 0 7.757 -20.406 0.000 0.00 0.00 O+0 HETATM 16 O UNK 0 5.044 -23.513 0.000 0.00 0.00 O+0 HETATM 17 C UNK 0 10.750 -22.158 0.000 0.00 0.00 C+0 HETATM 18 O UNK 0 12.095 -21.492 0.000 0.00 0.00 O+0 HETATM 19 O UNK 0 9.442 -21.135 0.000 0.00 0.00 O+0 HETATM 20 O UNK 0 11.965 -23.088 0.000 0.00 0.00 O+0 HETATM 21 O UNK 0 9.045 -27.363 0.000 0.00 0.00 O+0 HETATM 22 C UNK 0 18.688 -19.279 0.000 0.00 0.00 C+0 HETATM 23 C UNK 0 18.684 -20.819 0.000 0.00 0.00 C+0 HETATM 24 O UNK 0 20.016 -21.592 0.000 0.00 0.00 O+0 HETATM 25 N UNK 0 17.349 -21.587 0.000 0.00 0.00 N+0 HETATM 26 C UNK 0 16.017 -20.813 0.000 0.00 0.00 C+0 HETATM 27 C UNK 0 16.020 -19.273 0.000 0.00 0.00 C+0 HETATM 28 C UNK 0 14.688 -18.500 0.000 0.00 0.00 C+0 HETATM 29 C UNK 0 13.353 -19.267 0.000 0.00 0.00 C+0 HETATM 30 O UNK 0 13.349 -20.807 0.000 0.00 0.00 O+0 HETATM 31 C UNK 0 14.681 -21.580 0.000 0.00 0.00 C+0 HETATM 32 C UNK 0 14.678 -23.120 0.000 0.00 0.00 C+0 HETATM 33 C UNK 0 13.342 -23.887 0.000 0.00 0.00 C+0 HETATM 34 C UNK 0 13.339 -25.479 0.000 0.00 0.00 C+0 HETATM 35 O UNK 0 14.715 -26.279 0.000 0.00 0.00 O+0 HETATM 36 O UNK 0 16.010 -23.893 0.000 0.00 0.00 O+0 HETATM 37 C UNK 0 12.067 -18.748 0.000 0.00 0.00 C+0 HETATM 38 O UNK 0 11.046 -19.617 0.000 0.00 0.00 O+0 HETATM 39 O UNK 0 11.689 -17.008 0.000 0.00 0.00 O+0 HETATM 40 O UNK 0 13.539 -17.501 0.000 0.00 0.00 O+0 HETATM 41 O UNK 0 17.356 -18.507 0.000 0.00 0.00 O+0 HETATM 42 C UNK 0 14.561 -12.126 0.000 0.00 0.00 C+0 HETATM 43 C UNK 0 15.118 -13.562 0.000 0.00 0.00 C+0 HETATM 44 C UNK 0 14.153 -14.762 0.000 0.00 0.00 C+0 HETATM 45 C UNK 0 14.710 -16.198 0.000 0.00 0.00 C+0 HETATM 46 C UNK 0 16.232 -16.433 0.000 0.00 0.00 C+0 HETATM 47 C UNK 0 17.197 -15.233 0.000 0.00 0.00 C+0 HETATM 48 O UNK 0 16.640 -13.797 0.000 0.00 0.00 O+0 HETATM 49 O UNK 0 18.719 -15.468 0.000 0.00 0.00 O+0 HETATM 50 O UNK 0 16.789 -17.869 0.000 0.00 0.00 O+0 HETATM 51 O UNK 0 12.545 -14.478 0.000 0.00 0.00 O+0 HETATM 52 O UNK 0 15.599 -10.963 0.000 0.00 0.00 O+0 HETATM 53 C UNK 0 20.679 -13.093 0.000 0.00 0.00 C+0 HETATM 54 C UNK 0 21.218 -14.536 0.000 0.00 0.00 C+0 HETATM 55 C UNK 0 20.238 -15.723 0.000 0.00 0.00 C+0 HETATM 56 C UNK 0 20.776 -17.166 0.000 0.00 0.00 C+0 HETATM 57 C UNK 0 22.295 -17.421 0.000 0.00 0.00 C+0 HETATM 58 C UNK 0 23.275 -16.233 0.000 0.00 0.00 C+0 HETATM 59 O UNK 0 22.737 -14.791 0.000 0.00 0.00 O+0 HETATM 60 O UNK 0 24.794 -16.489 0.000 0.00 0.00 O+0 HETATM 61 O UNK 0 22.833 -18.864 0.000 0.00 0.00 O+0 HETATM 62 O UNK 0 19.796 -18.354 0.000 0.00 0.00 O+0 HETATM 63 O UNK 0 19.161 -12.837 0.000 0.00 0.00 O+0 HETATM 64 C UNK 0 12.982 -9.161 0.000 0.00 0.00 C+0 HETATM 65 C UNK 0 12.105 -10.427 0.000 0.00 0.00 C+0 HETATM 66 C UNK 0 10.571 -10.301 0.000 0.00 0.00 C+0 HETATM 67 C UNK 0 9.694 -11.567 0.000 0.00 0.00 C+0 HETATM 68 C UNK 0 10.352 -12.960 0.000 0.00 0.00 C+0 HETATM 69 C UNK 0 11.887 -13.086 0.000 0.00 0.00 C+0 HETATM 70 O UNK 0 12.764 -11.820 0.000 0.00 0.00 O+0 HETATM 71 C UNK 0 9.474 -14.173 0.000 0.00 0.00 C+0 HETATM 72 O UNK 0 8.159 -11.441 0.000 0.00 0.00 O+0 HETATM 73 O UNK 0 9.912 -8.909 0.000 0.00 0.00 O+0 HETATM 74 O UNK 0 12.324 -7.769 0.000 0.00 0.00 O+0 HETATM 75 C UNK 0 7.942 -14.015 0.000 0.00 0.00 C+0 HETATM 76 C UNK 0 7.039 -15.263 0.000 0.00 0.00 C+0 HETATM 77 O UNK 0 7.313 -12.610 0.000 0.00 0.00 O+0 HETATM 78 C UNK 0 8.583 -6.123 0.000 0.00 0.00 C+0 HETATM 79 C UNK 0 7.709 -7.392 0.000 0.00 0.00 C+0 HETATM 80 C UNK 0 6.174 -7.269 0.000 0.00 0.00 C+0 HETATM 81 C UNK 0 5.301 -8.537 0.000 0.00 0.00 C+0 HETATM 82 C UNK 0 5.962 -9.928 0.000 0.00 0.00 C+0 HETATM 83 C UNK 0 7.497 -10.051 0.000 0.00 0.00 C+0 HETATM 84 O UNK 0 8.371 -8.782 0.000 0.00 0.00 O+0 HETATM 85 O UNK 0 5.089 -11.196 0.000 0.00 0.00 O+0 HETATM 86 O UNK 0 3.766 -8.415 0.000 0.00 0.00 O+0 HETATM 87 O UNK 0 5.513 -5.878 0.000 0.00 0.00 O+0 HETATM 88 O UNK 0 7.922 -4.733 0.000 0.00 0.00 O+0 HETATM 89 C UNK 0 26.136 -17.245 0.000 0.00 0.00 C+0 HETATM 90 C UNK 0 27.461 -16.461 0.000 0.00 0.00 C+0 HETATM 91 C UNK 0 28.803 -17.217 0.000 0.00 0.00 C+0 HETATM 92 C UNK 0 30.128 -16.433 0.000 0.00 0.00 C+0 HETATM 93 C UNK 0 31.470 -17.189 0.000 0.00 0.00 C+0 HETATM 94 C UNK 0 32.796 -16.405 0.000 0.00 0.00 C+0 HETATM 95 C UNK 0 34.137 -17.161 0.000 0.00 0.00 C+0 HETATM 96 C UNK 0 35.463 -16.377 0.000 0.00 0.00 C+0 HETATM 97 C UNK 0 36.805 -17.133 0.000 0.00 0.00 C+0 HETATM 98 C UNK 0 38.130 -16.349 0.000 0.00 0.00 C+0 HETATM 99 C UNK 0 39.472 -17.105 0.000 0.00 0.00 C+0 HETATM 100 C UNK 0 40.797 -16.321 0.000 0.00 0.00 C+0 HETATM 101 C UNK 0 42.139 -17.077 0.000 0.00 0.00 C+0 HETATM 102 C UNK 0 43.465 -16.293 0.000 0.00 0.00 C+0 HETATM 103 C UNK 0 44.807 -17.049 0.000 0.00 0.00 C+0 HETATM 104 C UNK 0 46.132 -16.265 0.000 0.00 0.00 C+0 HETATM 105 C UNK 0 47.474 -17.021 0.000 0.00 0.00 C+0 HETATM 106 O UNK 0 28.819 -18.757 0.000 0.00 0.00 O+0 HETATM 107 N UNK 0 27.445 -14.921 0.000 0.00 0.00 N+0 HETATM 108 C UNK 0 48.799 -16.237 0.000 0.00 0.00 C+0 HETATM 109 C UNK 0 51.452 -14.167 0.000 0.00 0.00 C+0 HETATM 110 C UNK 0 50.117 -14.937 0.000 0.00 0.00 C+0 HETATM 111 C UNK 0 48.784 -14.165 0.000 0.00 0.00 C+0 HETATM 112 C UNK 0 47.450 -14.934 0.000 0.00 0.00 C+0 HETATM 113 C UNK 0 46.117 -14.164 0.000 0.00 0.00 C+0 HETATM 114 C UNK 0 44.783 -14.933 0.000 0.00 0.00 C+0 HETATM 115 C UNK 0 43.450 -14.162 0.000 0.00 0.00 C+0 HETATM 116 C UNK 0 42.115 -14.931 0.000 0.00 0.00 C+0 HETATM 117 C UNK 0 40.782 -14.160 0.000 0.00 0.00 C+0 HETATM 118 C UNK 0 39.449 -14.159 0.000 0.00 0.00 C+0 HETATM 119 C UNK 0 38.114 -14.928 0.000 0.00 0.00 C+0 HETATM 120 C UNK 0 36.781 -14.157 0.000 0.00 0.00 C+0 HETATM 121 C UNK 0 35.447 -14.926 0.000 0.00 0.00 C+0 HETATM 122 C UNK 0 34.114 -14.155 0.000 0.00 0.00 C+0 HETATM 123 C UNK 0 32.780 -14.925 0.000 0.00 0.00 C+0 HETATM 124 C UNK 0 31.446 -14.154 0.000 0.00 0.00 C+0 HETATM 125 C UNK 0 30.112 -14.923 0.000 0.00 0.00 C+0 HETATM 126 C UNK 0 28.779 -14.152 0.000 0.00 0.00 C+0 HETATM 127 O UNK 0 28.780 -12.612 0.000 0.00 0.00 O+0 CONECT 1 2 CONECT 2 1 3 4 CONECT 3 2 CONECT 4 2 5 CONECT 5 4 6 10 CONECT 6 5 7 21 CONECT 7 6 8 CONECT 8 7 9 17 20 CONECT 9 8 10 CONECT 10 5 9 11 CONECT 11 10 12 16 CONECT 12 11 13 15 CONECT 13 12 14 CONECT 14 13 CONECT 15 12 CONECT 16 11 CONECT 17 8 18 19 CONECT 18 17 CONECT 19 17 CONECT 20 8 33 CONECT 21 6 CONECT 22 23 CONECT 23 22 24 25 CONECT 24 23 CONECT 25 23 26 CONECT 26 25 27 31 CONECT 27 26 28 41 CONECT 28 27 29 CONECT 29 28 30 37 40 CONECT 30 29 31 CONECT 31 26 30 32 CONECT 32 31 33 36 CONECT 33 32 34 20 CONECT 34 33 35 CONECT 35 34 CONECT 36 32 CONECT 37 29 38 39 CONECT 38 37 CONECT 39 37 CONECT 40 29 45 CONECT 41 27 CONECT 42 43 52 CONECT 43 42 44 48 CONECT 44 43 45 51 CONECT 45 44 46 40 CONECT 46 45 47 50 CONECT 47 46 48 49 CONECT 48 43 47 CONECT 49 47 55 CONECT 50 46 CONECT 51 44 69 CONECT 52 42 CONECT 53 54 63 CONECT 54 53 55 59 CONECT 55 54 56 49 CONECT 56 55 57 62 CONECT 57 56 58 61 CONECT 58 57 59 60 CONECT 59 54 58 CONECT 60 58 89 CONECT 61 57 CONECT 62 56 CONECT 63 53 CONECT 64 65 74 CONECT 65 64 66 70 CONECT 66 65 67 73 CONECT 67 66 68 72 CONECT 68 67 69 71 CONECT 69 68 70 51 CONECT 70 65 69 CONECT 71 68 75 CONECT 72 67 83 CONECT 73 66 CONECT 74 64 CONECT 75 71 76 77 CONECT 76 75 CONECT 77 75 CONECT 78 79 88 CONECT 79 78 80 84 CONECT 80 79 81 87 CONECT 81 80 82 86 CONECT 82 81 83 85 CONECT 83 82 84 72 CONECT 84 79 83 CONECT 85 82 CONECT 86 81 CONECT 87 80 CONECT 88 78 CONECT 89 60 90 CONECT 90 89 91 107 CONECT 91 90 92 106 CONECT 92 91 93 CONECT 93 92 94 CONECT 94 93 95 CONECT 95 94 96 CONECT 96 95 97 CONECT 97 96 98 CONECT 98 97 99 CONECT 99 98 100 CONECT 100 99 101 CONECT 101 100 102 CONECT 102 101 103 CONECT 103 102 104 CONECT 104 103 105 CONECT 105 104 108 CONECT 106 91 CONECT 107 90 126 CONECT 108 105 CONECT 109 110 CONECT 110 109 111 CONECT 111 110 112 CONECT 112 111 113 CONECT 113 112 114 CONECT 114 113 115 CONECT 115 114 116 CONECT 116 115 117 CONECT 117 116 118 CONECT 118 117 119 CONECT 119 118 120 CONECT 120 119 121 CONECT 121 120 122 CONECT 122 121 123 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 CONECT 126 125 127 107 CONECT 127 126 MASTER 0 0 0 0 0 0 0 0 127 0 264 0 END 3D PDB for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))COMPND HMDB0011812 HETATM 1 C1 UNL 1 -4.024 -2.249 7.386 1.00 0.00 C HETATM 2 C2 UNL 1 -5.109 -1.222 7.225 1.00 0.00 C HETATM 3 C3 UNL 1 -5.650 -1.130 5.827 1.00 0.00 C HETATM 4 C4 UNL 1 -6.246 -2.499 5.402 1.00 0.00 C HETATM 5 C5 UNL 1 -6.780 -2.317 4.018 1.00 0.00 C HETATM 6 C6 UNL 1 -7.452 -3.477 3.448 1.00 0.00 C HETATM 7 C7 UNL 1 -6.843 -4.739 3.094 1.00 0.00 C HETATM 8 C8 UNL 1 -6.103 -5.528 4.129 1.00 0.00 C HETATM 9 C9 UNL 1 -5.773 -6.883 3.571 1.00 0.00 C HETATM 10 C10 UNL 1 -4.599 -7.378 3.416 1.00 0.00 C HETATM 11 C11 UNL 1 -3.299 -6.766 3.731 1.00 0.00 C HETATM 12 C12 UNL 1 -2.438 -6.699 2.466 1.00 0.00 C HETATM 13 C13 UNL 1 -1.051 -6.142 2.718 1.00 0.00 C HETATM 14 C14 UNL 1 -0.380 -6.182 1.351 1.00 0.00 C HETATM 15 C15 UNL 1 1.029 -5.715 1.320 1.00 0.00 C HETATM 16 C16 UNL 1 1.233 -4.316 1.758 1.00 0.00 C HETATM 17 C17 UNL 1 2.602 -3.761 1.739 1.00 0.00 C HETATM 18 C18 UNL 1 3.256 -3.676 0.413 1.00 0.00 C HETATM 19 O1 UNL 1 2.711 -4.234 -0.560 1.00 0.00 O HETATM 20 N1 UNL 1 4.457 -2.983 0.238 1.00 0.00 N HETATM 21 C19 UNL 1 5.227 -2.761 -0.951 1.00 0.00 C HETATM 22 C20 UNL 1 5.494 -1.280 -1.144 1.00 0.00 C HETATM 23 O2 UNL 1 4.387 -0.529 -1.346 1.00 0.00 O HETATM 24 C21 UNL 1 3.778 -0.486 -2.551 1.00 0.00 C HETATM 25 O3 UNL 1 3.588 0.799 -3.047 1.00 0.00 O HETATM 26 C22 UNL 1 2.249 1.231 -2.961 1.00 0.00 C HETATM 27 C23 UNL 1 2.210 2.734 -3.187 1.00 0.00 C HETATM 28 O4 UNL 1 0.895 3.137 -3.135 1.00 0.00 O HETATM 29 C24 UNL 1 1.695 0.824 -1.657 1.00 0.00 C HETATM 30 O5 UNL 1 0.508 1.432 -1.248 1.00 0.00 O HETATM 31 C25 UNL 1 0.680 2.127 -0.069 1.00 0.00 C HETATM 32 O6 UNL 1 0.285 1.282 1.049 1.00 0.00 O HETATM 33 C26 UNL 1 1.179 1.680 2.038 1.00 0.00 C HETATM 34 C27 UNL 1 1.022 1.017 3.362 1.00 0.00 C HETATM 35 O7 UNL 1 -0.234 1.261 3.887 1.00 0.00 O HETATM 36 C28 UNL 1 1.011 3.206 2.227 1.00 0.00 C HETATM 37 O8 UNL 1 1.322 3.515 3.518 1.00 0.00 O HETATM 38 C29 UNL 1 2.451 4.330 3.562 1.00 0.00 C HETATM 39 O9 UNL 1 3.573 3.475 3.906 1.00 0.00 O HETATM 40 C30 UNL 1 4.672 4.113 3.330 1.00 0.00 C HETATM 41 C31 UNL 1 5.851 3.244 3.106 1.00 0.00 C HETATM 42 O10 UNL 1 6.875 4.020 2.532 1.00 0.00 O HETATM 43 C32 UNL 1 4.915 5.346 4.171 1.00 0.00 C HETATM 44 O11 UNL 1 6.100 5.163 4.880 1.00 0.00 O HETATM 45 C33 UNL 1 3.800 5.518 5.189 1.00 0.00 C HETATM 46 O12 UNL 1 3.961 4.424 6.072 1.00 0.00 O HETATM 47 C34 UNL 1 4.216 4.769 7.368 1.00 0.00 C HETATM 48 O13 UNL 1 5.389 4.281 7.878 1.00 0.00 O HETATM 49 C35 UNL 1 5.459 2.936 8.111 1.00 0.00 C HETATM 50 C36 UNL 1 5.266 2.046 6.923 1.00 0.00 C HETATM 51 O14 UNL 1 5.357 0.705 7.377 1.00 0.00 O HETATM 52 C37 UNL 1 4.578 2.577 9.272 1.00 0.00 C HETATM 53 O15 UNL 1 3.963 1.330 9.097 1.00 0.00 O HETATM 54 C38 UNL 1 3.522 3.627 9.505 1.00 0.00 C HETATM 55 O16 UNL 1 2.405 2.956 10.041 1.00 0.00 O HETATM 56 C39 UNL 1 3.069 4.271 8.228 1.00 0.00 C HETATM 57 O17 UNL 1 2.275 5.367 8.582 1.00 0.00 O HETATM 58 C40 UNL 1 2.433 5.425 4.535 1.00 0.00 C HETATM 59 C41 UNL 1 1.920 6.726 4.005 1.00 0.00 C HETATM 60 C42 UNL 1 2.634 7.333 2.892 1.00 0.00 C HETATM 61 C43 UNL 1 2.498 6.984 1.450 1.00 0.00 C HETATM 62 O18 UNL 1 3.450 8.241 3.132 1.00 0.00 O HETATM 63 C44 UNL 1 -0.316 3.552 1.670 1.00 0.00 C HETATM 64 O19 UNL 1 -1.307 2.748 2.100 1.00 0.00 O HETATM 65 C45 UNL 1 -2.568 3.184 2.292 1.00 0.00 C HETATM 66 C46 UNL 1 -2.565 4.358 3.249 1.00 0.00 C HETATM 67 O20 UNL 1 -3.610 4.961 3.577 1.00 0.00 O HETATM 68 O21 UNL 1 -1.383 4.789 3.784 1.00 0.00 O HETATM 69 C47 UNL 1 -3.455 2.166 2.975 1.00 0.00 C HETATM 70 C48 UNL 1 -4.916 2.484 2.920 1.00 0.00 C HETATM 71 O22 UNL 1 -5.600 1.314 3.267 1.00 0.00 O HETATM 72 C49 UNL 1 -5.356 2.934 1.495 1.00 0.00 C HETATM 73 N2 UNL 1 -5.992 4.212 1.578 1.00 0.00 N HETATM 74 C50 UNL 1 -7.390 4.400 1.673 1.00 0.00 C HETATM 75 C51 UNL 1 -7.987 5.742 1.758 1.00 0.00 C HETATM 76 O23 UNL 1 -8.135 3.393 1.687 1.00 0.00 O HETATM 77 C52 UNL 1 -4.175 2.786 0.646 1.00 0.00 C HETATM 78 C53 UNL 1 -4.288 2.564 -0.798 1.00 0.00 C HETATM 79 O24 UNL 1 -4.342 3.645 -1.632 1.00 0.00 O HETATM 80 C54 UNL 1 -5.383 1.540 -1.158 1.00 0.00 C HETATM 81 C55 UNL 1 -6.616 2.398 -1.569 1.00 0.00 C HETATM 82 O25 UNL 1 -6.223 3.226 -2.641 1.00 0.00 O HETATM 83 O26 UNL 1 -5.115 0.835 -2.290 1.00 0.00 O HETATM 84 C56 UNL 1 -5.078 -0.549 -2.177 1.00 0.00 C HETATM 85 C57 UNL 1 -6.192 -1.175 -1.461 1.00 0.00 C HETATM 86 O27 UNL 1 -6.241 -2.456 -1.329 1.00 0.00 O HETATM 87 O28 UNL 1 -7.231 -0.511 -0.894 1.00 0.00 O HETATM 88 C58 UNL 1 -3.833 -0.857 -1.337 1.00 0.00 C HETATM 89 C59 UNL 1 -2.560 -0.856 -2.118 1.00 0.00 C HETATM 90 O29 UNL 1 -2.323 0.287 -2.859 1.00 0.00 O HETATM 91 C60 UNL 1 -2.605 -2.014 -3.125 1.00 0.00 C HETATM 92 N3 UNL 1 -1.934 -3.147 -2.505 1.00 0.00 N HETATM 93 C61 UNL 1 -0.796 -3.686 -3.128 1.00 0.00 C HETATM 94 C62 UNL 1 -0.061 -4.834 -2.554 1.00 0.00 C HETATM 95 O30 UNL 1 -0.337 -3.213 -4.222 1.00 0.00 O HETATM 96 C63 UNL 1 -4.063 -2.273 -3.355 1.00 0.00 C HETATM 97 C64 UNL 1 -4.289 -3.250 -4.451 1.00 0.00 C HETATM 98 O31 UNL 1 -3.376 -4.287 -4.356 1.00 0.00 O HETATM 99 C65 UNL 1 -4.412 -2.759 -5.843 1.00 0.00 C HETATM 100 O32 UNL 1 -4.899 -3.865 -6.612 1.00 0.00 O HETATM 101 C66 UNL 1 -3.178 -2.312 -6.541 1.00 0.00 C HETATM 102 O33 UNL 1 -2.203 -3.295 -6.614 1.00 0.00 O HETATM 103 O34 UNL 1 -4.835 -1.143 -3.415 1.00 0.00 O HETATM 104 O35 UNL 1 -3.131 3.606 1.080 1.00 0.00 O HETATM 105 C67 UNL 1 -0.110 3.354 0.105 1.00 0.00 C HETATM 106 O36 UNL 1 0.525 4.479 -0.400 1.00 0.00 O HETATM 107 C68 UNL 1 1.433 -0.696 -1.734 1.00 0.00 C HETATM 108 O37 UNL 1 1.303 -1.224 -0.476 1.00 0.00 O HETATM 109 C69 UNL 1 2.490 -1.273 -2.594 1.00 0.00 C HETATM 110 O38 UNL 1 2.082 -1.420 -3.954 1.00 0.00 O HETATM 111 C70 UNL 1 6.489 -3.605 -0.888 1.00 0.00 C HETATM 112 O39 UNL 1 7.203 -3.237 0.237 1.00 0.00 O HETATM 113 C71 UNL 1 7.380 -3.296 -2.089 1.00 0.00 C HETATM 114 C72 UNL 1 6.655 -3.537 -3.369 1.00 0.00 C HETATM 115 C73 UNL 1 7.579 -3.175 -4.536 1.00 0.00 C HETATM 116 C74 UNL 1 6.806 -3.302 -5.842 1.00 0.00 C HETATM 117 C75 UNL 1 7.709 -2.931 -6.965 1.00 0.00 C HETATM 118 C76 UNL 1 7.028 -2.930 -8.333 1.00 0.00 C HETATM 119 C77 UNL 1 5.899 -1.898 -8.336 1.00 0.00 C HETATM 120 C78 UNL 1 5.225 -1.821 -9.662 1.00 0.00 C HETATM 121 C79 UNL 1 4.098 -0.776 -9.639 1.00 0.00 C HETATM 122 C80 UNL 1 4.622 0.561 -9.298 1.00 0.00 C HETATM 123 C81 UNL 1 3.773 1.749 -9.337 1.00 0.00 C HETATM 124 C82 UNL 1 2.564 1.937 -8.530 1.00 0.00 C HETATM 125 C83 UNL 1 1.401 1.048 -8.742 1.00 0.00 C HETATM 126 C84 UNL 1 0.218 1.452 -7.857 1.00 0.00 C HETATM 127 C85 UNL 1 0.519 1.396 -6.398 1.00 0.00 C HETATM 128 H1 UNL 1 -4.488 -3.258 7.407 1.00 0.00 H HETATM 129 H2 UNL 1 -3.544 -2.113 8.387 1.00 0.00 H HETATM 130 H3 UNL 1 -3.272 -2.130 6.600 1.00 0.00 H HETATM 131 H4 UNL 1 -4.768 -0.228 7.539 1.00 0.00 H HETATM 132 H5 UNL 1 -5.977 -1.476 7.902 1.00 0.00 H HETATM 133 H6 UNL 1 -6.496 -0.416 5.866 1.00 0.00 H HETATM 134 H7 UNL 1 -4.851 -0.843 5.136 1.00 0.00 H HETATM 135 H8 UNL 1 -5.504 -3.258 5.555 1.00 0.00 H HETATM 136 H9 UNL 1 -7.114 -2.669 6.082 1.00 0.00 H HETATM 137 H10 UNL 1 -7.461 -1.391 4.040 1.00 0.00 H HETATM 138 H11 UNL 1 -5.955 -1.962 3.329 1.00 0.00 H HETATM 139 H12 UNL 1 -7.963 -3.082 2.474 1.00 0.00 H HETATM 140 H13 UNL 1 -8.433 -3.689 4.060 1.00 0.00 H HETATM 141 H14 UNL 1 -6.133 -4.535 2.209 1.00 0.00 H HETATM 142 H15 UNL 1 -7.634 -5.381 2.591 1.00 0.00 H HETATM 143 H16 UNL 1 -5.145 -4.981 4.310 1.00 0.00 H HETATM 144 H17 UNL 1 -6.731 -5.669 5.009 1.00 0.00 H HETATM 145 H18 UNL 1 -6.664 -7.483 3.275 1.00 0.00 H HETATM 146 H19 UNL 1 -4.545 -8.418 2.988 1.00 0.00 H HETATM 147 H20 UNL 1 -2.752 -7.405 4.460 1.00 0.00 H HETATM 148 H21 UNL 1 -3.319 -5.756 4.127 1.00 0.00 H HETATM 149 H22 UNL 1 -2.978 -6.035 1.766 1.00 0.00 H HETATM 150 H23 UNL 1 -2.402 -7.708 2.017 1.00 0.00 H HETATM 151 H24 UNL 1 -1.128 -5.084 3.023 1.00 0.00 H HETATM 152 H25 UNL 1 -0.479 -6.769 3.399 1.00 0.00 H HETATM 153 H26 UNL 1 -0.399 -7.241 1.030 1.00 0.00 H HETATM 154 H27 UNL 1 -0.998 -5.628 0.612 1.00 0.00 H HETATM 155 H28 UNL 1 1.398 -5.869 0.283 1.00 0.00 H HETATM 156 H29 UNL 1 1.646 -6.404 1.977 1.00 0.00 H HETATM 157 H30 UNL 1 0.783 -4.189 2.789 1.00 0.00 H HETATM 158 H31 UNL 1 0.547 -3.669 1.125 1.00 0.00 H HETATM 159 H32 UNL 1 3.229 -4.326 2.470 1.00 0.00 H HETATM 160 H33 UNL 1 2.573 -2.712 2.125 1.00 0.00 H HETATM 161 H34 UNL 1 4.877 -2.551 1.128 1.00 0.00 H HETATM 162 H35 UNL 1 4.639 -3.138 -1.810 1.00 0.00 H HETATM 163 H36 UNL 1 6.300 -1.114 -1.903 1.00 0.00 H HETATM 164 H37 UNL 1 5.973 -0.910 -0.187 1.00 0.00 H HETATM 165 H38 UNL 1 4.437 -1.033 -3.288 1.00 0.00 H HETATM 166 H39 UNL 1 1.712 0.796 -3.820 1.00 0.00 H HETATM 167 H40 UNL 1 2.582 2.909 -4.217 1.00 0.00 H HETATM 168 H41 UNL 1 2.892 3.285 -2.513 1.00 0.00 H HETATM 169 H42 UNL 1 0.760 4.084 -3.392 1.00 0.00 H HETATM 170 H43 UNL 1 2.448 0.994 -0.888 1.00 0.00 H HETATM 171 H44 UNL 1 1.781 2.177 0.091 1.00 0.00 H HETATM 172 H45 UNL 1 2.198 1.486 1.584 1.00 0.00 H HETATM 173 H46 UNL 1 1.203 -0.100 3.299 1.00 0.00 H HETATM 174 H47 UNL 1 1.746 1.406 4.120 1.00 0.00 H HETATM 175 H48 UNL 1 -0.818 0.486 3.606 1.00 0.00 H HETATM 176 H49 UNL 1 1.772 3.718 1.558 1.00 0.00 H HETATM 177 H50 UNL 1 2.689 4.647 2.545 1.00 0.00 H HETATM 178 H51 UNL 1 4.320 4.500 2.330 1.00 0.00 H HETATM 179 H52 UNL 1 6.270 2.716 3.950 1.00 0.00 H HETATM 180 H53 UNL 1 5.575 2.487 2.305 1.00 0.00 H HETATM 181 H54 UNL 1 6.797 4.068 1.546 1.00 0.00 H HETATM 182 H55 UNL 1 5.080 6.230 3.541 1.00 0.00 H HETATM 183 H56 UNL 1 6.106 4.263 5.229 1.00 0.00 H HETATM 184 H57 UNL 1 3.908 6.427 5.743 1.00 0.00 H HETATM 185 H58 UNL 1 4.254 5.886 7.416 1.00 0.00 H HETATM 186 H59 UNL 1 6.527 2.742 8.457 1.00 0.00 H HETATM 187 H60 UNL 1 4.330 2.147 6.388 1.00 0.00 H HETATM 188 H61 UNL 1 6.181 2.170 6.278 1.00 0.00 H HETATM 189 H62 UNL 1 5.064 0.087 6.638 1.00 0.00 H HETATM 190 H63 UNL 1 5.168 2.479 10.215 1.00 0.00 H HETATM 191 H64 UNL 1 3.646 1.048 9.989 1.00 0.00 H HETATM 192 H65 UNL 1 3.871 4.419 10.198 1.00 0.00 H HETATM 193 H66 UNL 1 2.319 3.119 11.003 1.00 0.00 H HETATM 194 H67 UNL 1 2.453 3.533 7.684 1.00 0.00 H HETATM 195 H68 UNL 1 2.896 6.130 8.763 1.00 0.00 H HETATM 196 H69 UNL 1 1.757 5.100 5.415 1.00 0.00 H HETATM 197 H70 UNL 1 1.924 7.430 4.903 1.00 0.00 H HETATM 198 H71 UNL 1 0.826 6.666 3.769 1.00 0.00 H HETATM 199 H72 UNL 1 3.410 6.428 1.155 1.00 0.00 H HETATM 200 H73 UNL 1 2.353 7.894 0.816 1.00 0.00 H HETATM 201 H74 UNL 1 1.627 6.353 1.248 1.00 0.00 H HETATM 202 H75 UNL 1 -0.511 4.640 1.671 1.00 0.00 H HETATM 203 H76 UNL 1 -1.274 5.681 4.263 1.00 0.00 H HETATM 204 H77 UNL 1 -3.190 1.110 2.746 1.00 0.00 H HETATM 205 H78 UNL 1 -3.210 2.220 4.101 1.00 0.00 H HETATM 206 H79 UNL 1 -5.177 3.274 3.613 1.00 0.00 H HETATM 207 H80 UNL 1 -5.348 0.543 2.695 1.00 0.00 H HETATM 208 H81 UNL 1 -6.134 2.163 1.235 1.00 0.00 H HETATM 209 H82 UNL 1 -5.399 5.075 1.559 1.00 0.00 H HETATM 210 H83 UNL 1 -9.100 5.716 1.732 1.00 0.00 H HETATM 211 H84 UNL 1 -7.654 6.288 2.685 1.00 0.00 H HETATM 212 H85 UNL 1 -7.669 6.404 0.927 1.00 0.00 H HETATM 213 H86 UNL 1 -3.747 1.727 1.012 1.00 0.00 H HETATM 214 H87 UNL 1 -3.315 2.036 -1.112 1.00 0.00 H HETATM 215 H88 UNL 1 -3.862 3.514 -2.487 1.00 0.00 H HETATM 216 H89 UNL 1 -5.589 0.960 -0.291 1.00 0.00 H HETATM 217 H90 UNL 1 -7.397 1.759 -1.982 1.00 0.00 H HETATM 218 H91 UNL 1 -6.974 2.955 -0.732 1.00 0.00 H HETATM 219 H92 UNL 1 -7.034 3.419 -3.161 1.00 0.00 H HETATM 220 H93 UNL 1 -7.972 -0.905 -0.345 1.00 0.00 H HETATM 221 H94 UNL 1 -3.951 -1.862 -0.848 1.00 0.00 H HETATM 222 H95 UNL 1 -3.802 -0.148 -0.471 1.00 0.00 H HETATM 223 H96 UNL 1 -1.728 -1.055 -1.391 1.00 0.00 H HETATM 224 H97 UNL 1 -1.493 0.135 -3.384 1.00 0.00 H HETATM 225 H98 UNL 1 -2.053 -1.690 -4.009 1.00 0.00 H HETATM 226 H99 UNL 1 -2.297 -3.525 -1.631 1.00 0.00 H HETATM 227 HA0 UNL 1 -0.308 -5.010 -1.499 1.00 0.00 H HETATM 228 HA1 UNL 1 -0.286 -5.776 -3.097 1.00 0.00 H HETATM 229 HA2 UNL 1 1.027 -4.649 -2.724 1.00 0.00 H HETATM 230 HA3 UNL 1 -4.371 -2.865 -2.411 1.00 0.00 H HETATM 231 HA4 UNL 1 -5.315 -3.770 -4.195 1.00 0.00 H HETATM 232 HA5 UNL 1 -3.626 -4.997 -3.728 1.00 0.00 H HETATM 233 HA6 UNL 1 -5.196 -1.951 -5.949 1.00 0.00 H HETATM 234 HA7 UNL 1 -5.090 -3.572 -7.535 1.00 0.00 H HETATM 235 HA8 UNL 1 -3.416 -2.085 -7.641 1.00 0.00 H HETATM 236 HA9 UNL 1 -2.726 -1.381 -6.193 1.00 0.00 H HETATM 237 HB0 UNL 1 -2.568 -4.209 -6.726 1.00 0.00 H HETATM 238 HB1 UNL 1 -1.078 3.249 -0.379 1.00 0.00 H HETATM 239 HB2 UNL 1 -0.153 5.180 -0.476 1.00 0.00 H HETATM 240 HB3 UNL 1 0.433 -0.812 -2.246 1.00 0.00 H HETATM 241 HB4 UNL 1 0.346 -1.195 -0.167 1.00 0.00 H HETATM 242 HB5 UNL 1 2.674 -2.296 -2.272 1.00 0.00 H HETATM 243 HB6 UNL 1 2.929 -1.459 -4.504 1.00 0.00 H HETATM 244 HB7 UNL 1 6.201 -4.653 -0.881 1.00 0.00 H HETATM 245 HB8 UNL 1 6.850 -2.473 0.736 1.00 0.00 H HETATM 246 HB9 UNL 1 8.193 -4.082 -2.033 1.00 0.00 H HETATM 247 HC0 UNL 1 7.887 -2.340 -2.016 1.00 0.00 H HETATM 248 HC1 UNL 1 5.719 -2.999 -3.513 1.00 0.00 H HETATM 249 HC2 UNL 1 6.460 -4.634 -3.427 1.00 0.00 H HETATM 250 HC3 UNL 1 7.946 -2.154 -4.389 1.00 0.00 H HETATM 251 HC4 UNL 1 8.386 -3.909 -4.562 1.00 0.00 H HETATM 252 HC5 UNL 1 5.941 -2.639 -5.818 1.00 0.00 H HETATM 253 HC6 UNL 1 6.419 -4.341 -5.919 1.00 0.00 H HETATM 254 HC7 UNL 1 8.130 -1.914 -6.819 1.00 0.00 H HETATM 255 HC8 UNL 1 8.511 -3.712 -7.019 1.00 0.00 H HETATM 256 HC9 UNL 1 6.651 -3.957 -8.498 1.00 0.00 H HETATM 257 HD0 UNL 1 7.794 -2.669 -9.077 1.00 0.00 H HETATM 258 HD1 UNL 1 5.156 -2.243 -7.588 1.00 0.00 H HETATM 259 HD2 UNL 1 6.387 -0.946 -8.092 1.00 0.00 H HETATM 260 HD3 UNL 1 4.789 -2.813 -9.915 1.00 0.00 H HETATM 261 HD4 UNL 1 5.928 -1.565 -10.477 1.00 0.00 H HETATM 262 HD5 UNL 1 3.327 -1.175 -8.931 1.00 0.00 H HETATM 263 HD6 UNL 1 3.637 -0.770 -10.641 1.00 0.00 H HETATM 264 HD7 UNL 1 5.159 0.555 -8.294 1.00 0.00 H HETATM 265 HD8 UNL 1 5.519 0.720 -10.002 1.00 0.00 H HETATM 266 HD9 UNL 1 3.434 1.880 -10.434 1.00 0.00 H HETATM 267 HE0 UNL 1 4.465 2.674 -9.226 1.00 0.00 H HETATM 268 HE1 UNL 1 2.212 3.011 -8.698 1.00 0.00 H HETATM 269 HE2 UNL 1 2.790 1.966 -7.411 1.00 0.00 H HETATM 270 HE3 UNL 1 1.037 1.189 -9.782 1.00 0.00 H HETATM 271 HE4 UNL 1 1.567 -0.004 -8.525 1.00 0.00 H HETATM 272 HE5 UNL 1 -0.678 0.849 -8.078 1.00 0.00 H HETATM 273 HE6 UNL 1 -0.057 2.522 -8.094 1.00 0.00 H HETATM 274 HE7 UNL 1 -0.429 1.736 -5.879 1.00 0.00 H HETATM 275 HE8 UNL 1 1.264 2.165 -6.076 1.00 0.00 H HETATM 276 HE9 UNL 1 0.708 0.397 -6.019 1.00 0.00 H CONECT 1 2 128 129 130 CONECT 2 3 131 132 CONECT 3 4 133 134 CONECT 4 5 135 136 CONECT 5 6 137 138 CONECT 6 7 139 140 CONECT 7 8 141 142 CONECT 8 9 143 144 CONECT 9 10 10 145 CONECT 10 11 146 CONECT 11 12 147 148 CONECT 12 13 149 150 CONECT 13 14 151 152 CONECT 14 15 153 154 CONECT 15 16 155 156 CONECT 16 17 157 158 CONECT 17 18 159 160 CONECT 18 19 19 20 CONECT 20 21 161 CONECT 21 22 111 162 CONECT 22 23 163 164 CONECT 23 24 CONECT 24 25 109 165 CONECT 25 26 CONECT 26 27 29 166 CONECT 27 28 167 168 CONECT 28 169 CONECT 29 30 107 170 CONECT 30 31 CONECT 31 32 105 171 CONECT 32 33 CONECT 33 34 36 172 CONECT 34 35 173 174 CONECT 35 175 CONECT 36 37 63 176 CONECT 37 38 CONECT 38 39 58 177 CONECT 39 40 CONECT 40 41 43 178 CONECT 41 42 179 180 CONECT 42 181 CONECT 43 44 45 182 CONECT 44 183 CONECT 45 46 58 184 CONECT 46 47 CONECT 47 48 56 185 CONECT 48 49 CONECT 49 50 52 186 CONECT 50 51 187 188 CONECT 51 189 CONECT 52 53 54 190 CONECT 53 191 CONECT 54 55 56 192 CONECT 55 193 CONECT 56 57 194 CONECT 57 195 CONECT 58 59 196 CONECT 59 60 197 198 CONECT 60 61 62 62 CONECT 61 199 200 201 CONECT 63 64 105 202 CONECT 64 65 CONECT 65 66 69 104 CONECT 66 67 67 68 CONECT 68 203 CONECT 69 70 204 205 CONECT 70 71 72 206 CONECT 71 207 CONECT 72 73 77 208 CONECT 73 74 209 CONECT 74 75 76 76 CONECT 75 210 211 212 CONECT 77 78 104 213 CONECT 78 79 80 214 CONECT 79 215 CONECT 80 81 83 216 CONECT 81 82 217 218 CONECT 82 219 CONECT 83 84 CONECT 84 85 88 103 CONECT 85 86 86 87 CONECT 87 220 CONECT 88 89 221 222 CONECT 89 90 91 223 CONECT 90 224 CONECT 91 92 96 225 CONECT 92 93 226 CONECT 93 94 95 95 CONECT 94 227 228 229 CONECT 96 97 103 230 CONECT 97 98 99 231 CONECT 98 232 CONECT 99 100 101 233 CONECT 100 234 CONECT 101 102 235 236 CONECT 102 237 CONECT 105 106 238 CONECT 106 239 CONECT 107 108 109 240 CONECT 108 241 CONECT 109 110 242 CONECT 110 243 CONECT 111 112 113 244 CONECT 112 245 CONECT 113 114 246 247 CONECT 114 115 248 249 CONECT 115 116 250 251 CONECT 116 117 252 253 CONECT 117 118 254 255 CONECT 118 119 256 257 CONECT 119 120 258 259 CONECT 120 121 260 261 CONECT 121 122 262 263 CONECT 122 123 264 265 CONECT 123 124 266 267 CONECT 124 125 268 269 CONECT 125 126 270 271 CONECT 126 127 272 273 CONECT 127 274 275 276 END SMILES for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3CC(C)=O)[C@H](O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)C(O3)[C@H](O)[C@@H](CO)O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)C(O3)[C@H](O)[C@H](O)CO)C(O)=O)C(O)=O)[C@H]2O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC\C=C/CCCCCCCC INCHI for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z)))InChI=1S/C85H149N3O39/c1-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-60(102)88-50(51(98)34-32-30-28-26-24-22-19-17-15-13-11-9-7-2)45-116-79-70(110)68(108)73(58(43-93)119-79)122-81-71(111)77(74(59(44-94)120-81)123-78-49(36-46(3)95)72(65(105)56(41-91)117-78)121-80-69(109)67(107)64(104)55(40-90)118-80)127-85(83(114)115)38-53(100)62(87-48(5)97)76(126-85)66(106)57(42-92)124-84(82(112)113)37-52(99)61(86-47(4)96)75(125-84)63(103)54(101)39-89/h20-21,49-59,61-81,89-94,98-101,103-111H,6-19,22-45H2,1-5H3,(H,86,96)(H,87,97)(H,88,102)(H,112,113)(H,114,115)/b21-20-/t49-,50+,51-,52+,53+,54-,55-,56-,57-,58-,59-,61-,62-,63-,64+,65+,66-,67+,68-,69-,70-,71-,72-,73-,74+,75?,76?,77-,78+,79-,80+,81+,84-,85+/m1/s1 3D Structure for HMDB0011812 (Ganglioside GD1b (d18:0/18:1(9Z))) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synonyms |
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| Chemical Formula | C85H149N3O39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Average Molecular Weight | 1837.0893 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Monoisotopic Molecular Weight | 1835.976822041 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IUPAC Name | (2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-{[(2S,3R)-3-hydroxy-2-[(9Z)-octadec-9-enamido]octadecyl]oxy}-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-5-acetamido-4-hydroxyoxane-2-carboxylic acid | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Traditional Name | (2S,4S,5R)-6-[(1S,2R)-2-{[(2S,4S,5R)-2-carboxy-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxan-2-yl]oxy}-1,3-dihydroxypropyl]-2-{[(2S,3R,4R,5S,6R)-2-{[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-{[(2S,3R)-3-hydroxy-2-[(9Z)-octadec-9-enamido]octadecyl]oxy}-2-(hydroxymethyl)oxan-3-yl]oxy}-3-hydroxy-5-{[(2S,3R,4R,5R,6R)-5-hydroxy-6-(hydroxymethyl)-3-(2-oxopropyl)-4-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-(hydroxymethyl)oxan-4-yl]oxy}-5-acetamido-4-hydroxyoxane-2-carboxylic acid | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CAS Registry Number | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SMILES | CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H]3CC(C)=O)[C@H](O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)C(O3)[C@H](O)[C@@H](CO)O[C@@]3(C[C@H](O)[C@@H](NC(C)=O)C(O3)[C@H](O)[C@H](O)CO)C(O)=O)C(O)=O)[C@H]2O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC\C=C/CCCCCCCC | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Identifier | InChI=1S/C85H149N3O39/c1-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-60(102)88-50(51(98)34-32-30-28-26-24-22-19-17-15-13-11-9-7-2)45-116-79-70(110)68(108)73(58(43-93)119-79)122-81-71(111)77(74(59(44-94)120-81)123-78-49(36-46(3)95)72(65(105)56(41-91)117-78)121-80-69(109)67(107)64(104)55(40-90)118-80)127-85(83(114)115)38-53(100)62(87-48(5)97)76(126-85)66(106)57(42-92)124-84(82(112)113)37-52(99)61(86-47(4)96)75(125-84)63(103)54(101)39-89/h20-21,49-59,61-81,89-94,98-101,103-111H,6-19,22-45H2,1-5H3,(H,86,96)(H,87,97)(H,88,102)(H,112,113)(H,114,115)/b21-20-/t49-,50+,51-,52+,53+,54-,55-,56-,57-,58-,59-,61-,62-,63-,64+,65+,66-,67+,68-,69-,70-,71-,72-,73-,74+,75?,76?,77-,78+,79-,80+,81+,84-,85+/m1/s1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Key | UJPVYNCJBULENX-AOMPNTDKSA-N | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemical Taxonomy | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description | Belongs to the class of organic compounds known as glycosphingolipids. These are sphingolipids containing a saccharide moiety glycosidically attached to the sphingoid base. Although saccharide moieties are mostly O-glycosidically linked to the ceramide moiety, other sphingolipids with glycosidic bonds of other types (e.G. S-,C-, or N-type) has been reported. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Kingdom | Organic compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Super Class | Lipids and lipid-like molecules | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Class | Sphingolipids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sub Class | Glycosphingolipids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Direct Parent | Glycosphingolipids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative Parents |
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| Substituents |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Framework | Aliphatic heteromonocyclic compounds | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| External Descriptors | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Ontology | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Physiological effect | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Disposition | Biological location
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Process | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Role | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Physical Properties | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| State | Solid | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Molecular Properties |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Chromatographic Properties | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Molecular Properties |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Chromatographic Properties | Predicted Kovats Retention IndicesNot Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Spectra | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MS/MS Spectra
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| Biological Properties | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Cellular Locations |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Biospecimen Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Tissue Locations | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Pathways |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Normal Concentrations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Abnormal Concentrations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Associated Disorders and Diseases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Disease References | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Associated OMIM IDs | None | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| External Links | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DrugBank ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phenol Explorer Compound ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| FooDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KNApSAcK ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemspider ID | 35032127 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KEGG Compound ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BioCyc ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BiGG ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Wikipedia Link | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| METLIN ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PubChem Compound | 53481088 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ChEBI ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Food Biomarker Ontology | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| VMH ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MarkerDB ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Good Scents ID | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| References | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synthesis Reference | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Material Safety Data Sheet (MSDS) | Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| General References |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Only showing the first 10 proteins. There are 41 proteins in total.
Enzymes
- General function:
- Involved in transferase activity, transferring hexosyl groups
- Specific function:
- Catalyzes the formation of some glycolipid via the addition of N-acetylgalactosamine (GalNAc) in alpha-1,3-linkage to some substrate. Glycolipids probably serve for adherence of some pathogens
- Gene Name:
- GBGT1
- Uniprot ID:
- Q8N5D6
- Molecular weight:
- 40126.9
- General function:
- Involved in N-acetylglucosaminylphosphatidylinositol de
- Specific function:
- Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
- Gene Name:
- PIGL
- Uniprot ID:
- Q9Y2B2
- Molecular weight:
- 28530.965
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGQ
- Uniprot ID:
- Q9BRB3
- Molecular weight:
- 65343.25
- General function:
- Involved in biosynthetic process
- Specific function:
- Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis.
- Gene Name:
- PIGA
- Uniprot ID:
- P37287
- Molecular weight:
- 54126.065
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltr
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGH
- Uniprot ID:
- Q14442
- Molecular weight:
- 21080.415
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltr
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGP
- Uniprot ID:
- P57054
- Molecular weight:
- 18089.055
- General function:
- Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
- Specific function:
- Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
- Gene Name:
- PIGC
- Uniprot ID:
- Q92535
- Molecular weight:
- 33582.18
- General function:
- Involved in sphingolipid activator protein activity
- Specific function:
- Binds gangliosides and stimulates ganglioside GM2 degradation. It stimulates only the breakdown of ganglioside GM2 and glycolipid GA2 by beta-hexosaminidase A. It extracts single GM2 molecules from membranes and presents them in soluble form to beta-hexosaminidase A for cleavage of N-acetyl-D-galactosamine and conversion to GM3
- Gene Name:
- GM2A
- Uniprot ID:
- P17900
- Molecular weight:
- 20838.1
- General function:
- Involved in immune response
- Specific function:
- T-cell surface glycoprotein CD1e, soluble is required for the presentation of glycolipid antigens on the cell surface. The membrane-associated form is not active
- Gene Name:
- CD1E
- Uniprot ID:
- P15812
- Molecular weight:
- 43626.1
- General function:
- Involved in cholesterol binding
- Specific function:
- May be involved in the regulation of the lipid composition of sperm membranes during the maturation in the epididymis
- Gene Name:
- NPC2
- Uniprot ID:
- P61916
- Molecular weight:
- 16570.1
Only showing the first 10 proteins. There are 41 proteins in total.