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Showing metabocard for SM(d18:1/24:0) (HMDB0011697)

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Record Information
Version5.0
StatusDetected and Quantified
Creation Date2009-02-19 23:38:54 UTC
Update Date2022-03-07 02:51:13 UTC
HMDB IDHMDB0011697
Secondary Accession Numbers
  • HMDB0012106
  • HMDB11697
  • HMDB12106
Metabolite Identification
Common NameSM(d18:1/24:0)
DescriptionSphingomyelin (d18:1/24:0) or SM(d18:1/24:0) is a type of sphingolipid found in animal cell membranes, especially in the membranous myelin sheath which surrounds some nerve cell axons. It usually consists of phosphorylcholine and ceramide. SM(d18:1/24:0) consists of a sphingosine backbone and a lignoceric acid chain. In humans, sphingomyelin is the only membrane phospholipid not derived from glycerol. Like all sphingolipids, SM has a ceramide core (sphingosine bonded to a fatty acid via an amide linkage). In addition, it contains one polar head group, which is either phosphocholine or phosphoethanolamine. The plasma membrane of cells is highly enriched in sphingomyelin and is considered largely to be found in the exoplasmic leaflet of the cell membrane. However, there is some evidence that there may also be a sphingomyelin pool in the inner leaflet of the membrane. Moreover, neutral sphingomyelinase-2, an enzyme that breaks down sphingomyelin into ceramide, has been found to localize exclusively to the inner leaflet further suggesting that there may be sphingomyelin present there. Sphingomyelin can accumulate in a rare hereditary disease called Niemann-Pick Disease, types A and B. Niemann-Pick disease is a genetically-inherited disease caused by a deficiency in the enzyme sphingomyelinase, which causes the accumulation of sphingomyelin in spleen, liver, lungs, bone marrow, and the brain, causing irreversible neurological damage. SMs play a role in signal transduction. Sphingomyelins are synthesized by the transfer of phosphorylcholine from phosphatidylcholine to a ceramide in a reaction catalyzed by sphingomyelin synthase.
Structure
Data?1591813326
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0011697 (SM(d18:1/24:0))

SM(d18:1/24:0)
  Mrv1652306102019512D          

 57 56  0  0  0  0            999 V2000
   -2.3824    0.3590    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6679    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9699   -0.3554    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7950   -0.3554    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9590    0.3595    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2446    0.7720    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6570    1.4867    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1679    0.0574    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    0.4699    1.1847    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1845    0.7721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8991    1.1847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6135    0.7721    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    2.2010    0.0576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2748    1.6360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3280    0.3596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969    0.7716    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0969    1.5430    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8110    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5251    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2392    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9534    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6675    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3816    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0957    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8099    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5240    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2381    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9522    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6664    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3805    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0946    0.7716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8087    0.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5095   -1.5393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2236   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9377   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6518   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.0801   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7942   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5083   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2225   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9366   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6507   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3648   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0790   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7931   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.5072   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2213   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.9355   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.6496   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.3637   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.0778   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.7919   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5060   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.2201   -0.7679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.9343   -0.3548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  1  3  1  1  0  0  0
  1  4  1  6  0  0  0
  6  5  1  0  0  0  0
  7  6  2  0  0  0  0
  8  6  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  1  0  0  0  0
  9  6  1  0  0  0  0
  5  2  1  0  0  0  0
  1 16  1  0  0  0  0
  4 33  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
M  CHG  2   8  -1  12   1
M  END
Download

3D MOL for HMDB0011697 (SM(d18:1/24:0))

HMDB0011697
     RDKit          3D
SM(d18:1/24:0)
151150  0  0  0  0  0  0  0  0999 V2000
    3.7332   -1.1708    0.8158 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8203   -1.3648   -0.1991 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0135   -0.4763    0.0344 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5532    0.9608   -0.0342 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6841    1.9238    0.1950 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7624    1.8109   -0.8244 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3055    2.1173   -2.2318 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7830    3.5327   -2.3593 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3821    3.7341   -3.8090 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8713    5.1110   -4.0660 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6345    5.4928   -3.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3177    6.9119   -3.6804 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0908    7.4507   -3.0447 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8085    6.8483   -3.4193 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5774    5.8952   -4.2929 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1819    5.4505   -4.4988 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2056    5.9977   -5.7531 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0753    4.0079   -4.5231 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6454    3.8723   -4.5491 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1800    4.4498   -3.4258 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8632    4.3235   -3.4545 P   0  0  0  0  0  5  0  0  0  0  0  0
   -4.4646    5.3846   -4.3495 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4703    4.5572   -1.8766 O   0  0  0  0  0  1  0  0  0  0  0  0
   -4.3537    2.7775   -3.9522 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7249    2.6124   -3.8423 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0500    1.1979   -4.2802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4785    0.9113   -4.2001 N   0  0  0  0  0  4  0  0  0  0  0  0
   -8.2616    2.0563   -4.6228 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8670    0.5681   -2.8512 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7423   -0.1784   -5.1351 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3027    3.3574   -3.2608 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2391    1.9554   -3.0940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1427    1.2304   -4.0321 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6154    1.3602   -1.8022 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0039    0.0243   -1.5191 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3220   -1.0941   -2.4314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4195   -2.3324   -1.9146 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9047   -2.1649   -1.9101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6592   -3.3353   -1.3714 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4842   -4.6387   -2.0687 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3678   -5.6597   -1.3410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9489   -5.7849    0.1135 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5747   -6.3392    0.1806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9684   -6.3359    1.5915 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7488   -4.9061    1.9865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1371   -4.8038    3.3520 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0831   -5.3435    4.3831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4978   -5.2513    5.7815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1206   -3.8511    6.1534 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1260   -2.8192    6.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2566   -2.7809    7.1385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0226   -2.6505    8.5773 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3308   -3.6093    9.4064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8705   -4.9843    9.5949 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2577   -4.9587   10.2571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6931   -6.3998   10.3806 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9885   -2.0032    0.6459 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1634   -0.2351    0.6981 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1576   -1.2795    1.8417 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3767   -1.1717   -1.2100 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1247   -2.4479   -0.2061 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4450   -0.7145    1.0274 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7180   -0.6385   -0.8049 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7402    1.1115    0.6978 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1188    1.1048   -1.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2710    2.9514    0.2501 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1594    1.6438    1.1786 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6124    2.4630   -0.5528 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1609    0.7707   -0.8302 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5406    1.4152   -2.5842 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2074    2.0546   -2.8848 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5557    4.2692   -2.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9219    3.6312   -1.6714 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6523    2.9480   -4.0464 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3125    3.6100   -4.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6281    5.8902   -3.8464 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5841    5.2245   -5.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8165    4.7974   -3.3143 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9960    5.5034   -2.1968 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2360    6.9976   -4.8012 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1666    7.5899   -3.3540 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2350    7.3055   -1.9232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0668    8.5694   -3.1432 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9266    7.2882   -2.8773 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3578    5.4506   -4.8664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4748    5.9316   -3.7200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5272    6.9274   -5.5625 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2048    3.4069   -5.3901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9466    4.5259   -5.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9436    2.8529   -4.7610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9761    2.7270   -2.7649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2524    3.3703   -4.4544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4736    0.5289   -3.6055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7497    1.0511   -5.3315 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  23  -1  27   1
M  END
Download

3D SDF for HMDB0011697 (SM(d18:1/24:0))

SM(d18:1/24:0)
  Mrv1652306102019512D          

 57 56  0  0  0  0            999 V2000
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M  CHG  2   8  -1  12   1
M  END
> <DATABASE_ID>
HMDB0011697

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C47H95N2O6P/c1-6-8-10-12-14-16-18-20-21-22-23-24-25-26-27-29-31-33-35-37-39-41-47(51)48-45(44-55-56(52,53)54-43-42-49(3,4)5)46(50)40-38-36-34-32-30-28-19-17-15-13-11-9-7-2/h38,40,45-46,50H,6-37,39,41-44H2,1-5H3,(H-,48,51,52,53)/b40-38+/t45-,46+/m0/s1

> <INCHI_KEY>
QEDPUVGSSDPBMD-XTAIVQBESA-N

> <FORMULA>
C47H95N2O6P

> <MOLECULAR_WEIGHT>
815.259

> <EXACT_MASS>
814.692775785

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
151

> <JCHEM_AVERAGE_POLARIZABILITY>
105.96750913179392

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2S,3R,4E)-3-hydroxy-2-tetracosanamidooctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
6.30

> <JCHEM_LOGP>
10.53260706086159

> <ALOGPS_LOGS>
-7.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.49920132064026

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.865155035270682

> <JCHEM_PKA_STRONGEST_BASIC>
-1.050204146041731

> <JCHEM_POLAR_SURFACE_AREA>
107.92000000000002

> <JCHEM_REFRACTIVITY>
250.74990000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
44

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.74e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2S,3R,4E)-3-hydroxy-2-tetracosanamidooctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0011697 (SM(d18:1/24:0))

HMDB0011697
     RDKit          3D
SM(d18:1/24:0)
151150  0  0  0  0  0  0  0  0999 V2000
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M  CHG  2  23  -1  27   1
M  END
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PDB for HMDB0011697 (SM(d18:1/24:0))

HEADER    PROTEIN                                 10-JUN-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: SM(d18:1/24:0)                                    
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-JUN-20         0                                  
HETATM    1  C   UNK     0      -4.447   0.670   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.113   1.440   0.000  0.00  0.00           C+0
HETATM    3  H   UNK     0      -3.677  -0.663   0.000  0.00  0.00           H+0
HETATM    4  N   UNK     0      -5.217  -0.663   0.000  0.00  0.00           N+0
HETATM    5  O   UNK     0      -1.790   0.671   0.000  0.00  0.00           O+0
HETATM    6  P   UNK     0      -0.457   1.441   0.000  0.00  0.00           P+0
HETATM    7  O   UNK     0      -1.226   2.775   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       0.313   0.107   0.000  0.00  0.00           O-1
HETATM    9  O   UNK     0       0.877   2.211   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.211   1.441   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.545   2.211   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       4.879   1.441   0.000  0.00  0.00           N+1
HETATM   13  C   UNK     0       4.109   0.108   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.113   3.054   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.212   0.671   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.781   1.440   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -5.781   2.880   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -7.114   0.669   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -8.447   1.440   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -9.780   0.669   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -11.113   1.440   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -12.446   0.669   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -13.779   1.440   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -15.112   0.669   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -16.445   1.440   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -17.778   0.669   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -19.111   1.440   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -20.444   0.669   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -21.777   1.440   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -23.110   0.669   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -24.443   1.440   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -25.776   0.669   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -6.551  -1.433   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -6.551  -2.873   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      -7.884  -0.662   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -9.217  -1.433   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -10.550  -0.662   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -11.883  -1.433   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -13.216  -0.662   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -14.549  -1.433   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0     -15.882  -0.662   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0     -17.215  -1.433   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0     -18.548  -0.662   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0     -19.881  -1.433   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0     -21.214  -0.662   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0     -22.547  -1.433   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0     -23.880  -0.662   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0     -25.213  -1.433   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0     -26.546  -0.662   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0     -27.880  -1.433   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0     -29.213  -0.662   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0     -30.546  -1.433   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0     -31.879  -0.662   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0     -33.212  -1.433   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -34.545  -0.662   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0     -35.878  -1.433   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0     -37.211  -0.662   0.000  0.00  0.00           C+0
CONECT    1    2    3    4   16                                             
CONECT    2    1    5                                                       
CONECT    3    1                                                            
CONECT    4    1   33                                                       
CONECT    5    6    2                                                       
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9   10    6                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12                                                            
CONECT   16    1   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33    4   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  112    0
END
Download

3D PDB for HMDB0011697 (SM(d18:1/24:0))

COMPND    HMDB0011697
HETATM    1  C1  UNL     1       3.733  -1.171   0.816  1.00  0.00           C  
HETATM    2  C2  UNL     1       4.820  -1.365  -0.199  1.00  0.00           C  
HETATM    3  C3  UNL     1       6.013  -0.476   0.034  1.00  0.00           C  
HETATM    4  C4  UNL     1       5.553   0.961  -0.034  1.00  0.00           C  
HETATM    5  C5  UNL     1       6.684   1.924   0.195  1.00  0.00           C  
HETATM    6  C6  UNL     1       7.762   1.811  -0.824  1.00  0.00           C  
HETATM    7  C7  UNL     1       7.305   2.117  -2.232  1.00  0.00           C  
HETATM    8  C8  UNL     1       6.783   3.533  -2.359  1.00  0.00           C  
HETATM    9  C9  UNL     1       6.382   3.734  -3.809  1.00  0.00           C  
HETATM   10  C10 UNL     1       5.871   5.111  -4.066  1.00  0.00           C  
HETATM   11  C11 UNL     1       4.634   5.493  -3.279  1.00  0.00           C  
HETATM   12  C12 UNL     1       4.318   6.912  -3.680  1.00  0.00           C  
HETATM   13  C13 UNL     1       3.091   7.451  -3.045  1.00  0.00           C  
HETATM   14  C14 UNL     1       1.809   6.848  -3.419  1.00  0.00           C  
HETATM   15  C15 UNL     1       1.577   5.895  -4.293  1.00  0.00           C  
HETATM   16  C16 UNL     1       0.182   5.451  -4.499  1.00  0.00           C  
HETATM   17  O1  UNL     1      -0.206   5.998  -5.753  1.00  0.00           O  
HETATM   18  C17 UNL     1      -0.075   4.008  -4.523  1.00  0.00           C  
HETATM   19  C18 UNL     1      -1.645   3.872  -4.549  1.00  0.00           C  
HETATM   20  O2  UNL     1      -2.180   4.450  -3.426  1.00  0.00           O  
HETATM   21  P1  UNL     1      -3.863   4.324  -3.454  1.00  0.00           P  
HETATM   22  O3  UNL     1      -4.465   5.385  -4.349  1.00  0.00           O  
HETATM   23  O4  UNL     1      -4.470   4.557  -1.877  1.00  0.00           O1-
HETATM   24  O5  UNL     1      -4.354   2.777  -3.952  1.00  0.00           O  
HETATM   25  C19 UNL     1      -5.725   2.612  -3.842  1.00  0.00           C  
HETATM   26  C20 UNL     1      -6.050   1.198  -4.280  1.00  0.00           C  
HETATM   27  N1  UNL     1      -7.478   0.911  -4.200  1.00  0.00           N1+
HETATM   28  C21 UNL     1      -8.262   2.056  -4.623  1.00  0.00           C  
HETATM   29  C22 UNL     1      -7.867   0.568  -2.851  1.00  0.00           C  
HETATM   30  C23 UNL     1      -7.742  -0.178  -5.135  1.00  0.00           C  
HETATM   31  N2  UNL     1       0.303   3.357  -3.261  1.00  0.00           N  
HETATM   32  C24 UNL     1       0.239   1.955  -3.094  1.00  0.00           C  
HETATM   33  O6  UNL     1      -0.143   1.230  -4.032  1.00  0.00           O  
HETATM   34  C25 UNL     1       0.615   1.360  -1.802  1.00  0.00           C  
HETATM   35  C26 UNL     1       0.004   0.024  -1.519  1.00  0.00           C  
HETATM   36  C27 UNL     1       0.322  -1.094  -2.431  1.00  0.00           C  
HETATM   37  C28 UNL     1      -0.420  -2.332  -1.915  1.00  0.00           C  
HETATM   38  C29 UNL     1      -1.905  -2.165  -1.910  1.00  0.00           C  
HETATM   39  C30 UNL     1      -2.659  -3.335  -1.371  1.00  0.00           C  
HETATM   40  C31 UNL     1      -2.484  -4.639  -2.069  1.00  0.00           C  
HETATM   41  C32 UNL     1      -3.368  -5.660  -1.341  1.00  0.00           C  
HETATM   42  C33 UNL     1      -2.949  -5.785   0.114  1.00  0.00           C  
HETATM   43  C34 UNL     1      -1.575  -6.339   0.181  1.00  0.00           C  
HETATM   44  C35 UNL     1      -0.968  -6.336   1.591  1.00  0.00           C  
HETATM   45  C36 UNL     1      -0.749  -4.906   1.986  1.00  0.00           C  
HETATM   46  C37 UNL     1      -0.137  -4.804   3.352  1.00  0.00           C  
HETATM   47  C38 UNL     1      -1.083  -5.344   4.383  1.00  0.00           C  
HETATM   48  C39 UNL     1      -0.498  -5.251   5.781  1.00  0.00           C  
HETATM   49  C40 UNL     1      -0.121  -3.851   6.153  1.00  0.00           C  
HETATM   50  C41 UNL     1      -1.126  -2.819   6.198  1.00  0.00           C  
HETATM   51  C42 UNL     1      -2.257  -2.781   7.139  1.00  0.00           C  
HETATM   52  C43 UNL     1      -2.023  -2.650   8.577  1.00  0.00           C  
HETATM   53  C44 UNL     1      -1.331  -3.609   9.406  1.00  0.00           C  
HETATM   54  C45 UNL     1      -1.871  -4.984   9.595  1.00  0.00           C  
HETATM   55  C46 UNL     1      -3.258  -4.959  10.257  1.00  0.00           C  
HETATM   56  C47 UNL     1      -3.693  -6.400  10.381  1.00  0.00           C  
HETATM   57  H1  UNL     1       2.988  -2.003   0.646  1.00  0.00           H  
HETATM   58  H2  UNL     1       3.163  -0.235   0.698  1.00  0.00           H  
HETATM   59  H3  UNL     1       4.158  -1.280   1.842  1.00  0.00           H  
HETATM   60  H4  UNL     1       4.377  -1.172  -1.210  1.00  0.00           H  
HETATM   61  H5  UNL     1       5.125  -2.448  -0.206  1.00  0.00           H  
HETATM   62  H6  UNL     1       6.445  -0.715   1.027  1.00  0.00           H  
HETATM   63  H7  UNL     1       6.718  -0.639  -0.805  1.00  0.00           H  
HETATM   64  H8  UNL     1       4.740   1.112   0.698  1.00  0.00           H  
HETATM   65  H9  UNL     1       5.119   1.105  -1.048  1.00  0.00           H  
HETATM   66  H10 UNL     1       6.271   2.951   0.250  1.00  0.00           H  
HETATM   67  H11 UNL     1       7.159   1.644   1.179  1.00  0.00           H  
HETATM   68  H12 UNL     1       8.612   2.463  -0.553  1.00  0.00           H  
HETATM   69  H13 UNL     1       8.161   0.771  -0.830  1.00  0.00           H  
HETATM   70  H14 UNL     1       6.541   1.415  -2.584  1.00  0.00           H  
HETATM   71  H15 UNL     1       8.207   2.055  -2.885  1.00  0.00           H  
HETATM   72  H16 UNL     1       7.556   4.269  -2.050  1.00  0.00           H  
HETATM   73  H17 UNL     1       5.922   3.631  -1.671  1.00  0.00           H  
HETATM   74  H18 UNL     1       5.652   2.948  -4.046  1.00  0.00           H  
HETATM   75  H19 UNL     1       7.313   3.610  -4.417  1.00  0.00           H  
HETATM   76  H20 UNL     1       6.628   5.890  -3.846  1.00  0.00           H  
HETATM   77  H21 UNL     1       5.584   5.225  -5.139  1.00  0.00           H  
HETATM   78  H22 UNL     1       3.816   4.797  -3.314  1.00  0.00           H  
HETATM   79  H23 UNL     1       4.996   5.503  -2.197  1.00  0.00           H  
HETATM   80  H24 UNL     1       4.236   6.998  -4.801  1.00  0.00           H  
HETATM   81  H25 UNL     1       5.167   7.590  -3.354  1.00  0.00           H  
HETATM   82  H26 UNL     1       3.235   7.306  -1.923  1.00  0.00           H  
HETATM   83  H27 UNL     1       3.067   8.569  -3.143  1.00  0.00           H  
HETATM   84  H28 UNL     1       0.927   7.288  -2.877  1.00  0.00           H  
HETATM   85  H29 UNL     1       2.358   5.451  -4.866  1.00  0.00           H  
HETATM   86  H30 UNL     1      -0.475   5.932  -3.720  1.00  0.00           H  
HETATM   87  H31 UNL     1      -0.527   6.927  -5.562  1.00  0.00           H  
HETATM   88  H32 UNL     1       0.205   3.407  -5.390  1.00  0.00           H  
HETATM   89  H33 UNL     1      -1.947   4.526  -5.417  1.00  0.00           H  
HETATM   90  H34 UNL     1      -1.944   2.853  -4.761  1.00  0.00           H  
HETATM   91  H35 UNL     1      -5.976   2.727  -2.765  1.00  0.00           H  
HETATM   92  H36 UNL     1      -6.252   3.370  -4.454  1.00  0.00           H  
HETATM   93  H37 UNL     1      -5.474   0.529  -3.606  1.00  0.00           H  
HETATM   94  H38 UNL     1      -5.750   1.051  -5.331  1.00  0.00           H  
HETATM   95  H39 UNL     1      -8.292   2.863  -3.852  1.00  0.00           H  
HETATM   96  H40 UNL     1      -9.284   1.761  -4.934  1.00  0.00           H  
HETATM   97  H41 UNL     1      -7.739   2.489  -5.512  1.00  0.00           H  
HETATM   98  H42 UNL     1      -8.958   0.416  -2.838  1.00  0.00           H  
HETATM   99  H43 UNL     1      -7.337  -0.347  -2.491  1.00  0.00           H  
HETATM  100  H44 UNL     1      -7.629   1.440  -2.213  1.00  0.00           H  
HETATM  101  H45 UNL     1      -8.812  -0.477  -5.150  1.00  0.00           H  
HETATM  102  H46 UNL     1      -7.398   0.156  -6.141  1.00  0.00           H  
HETATM  103  H47 UNL     1      -7.088  -1.050  -4.864  1.00  0.00           H  
HETATM  104  H48 UNL     1       0.626   3.946  -2.471  1.00  0.00           H  
HETATM  105  H49 UNL     1       0.321   2.022  -0.935  1.00  0.00           H  
HETATM  106  H50 UNL     1       1.743   1.277  -1.723  1.00  0.00           H  
HETATM  107  H51 UNL     1      -1.129   0.209  -1.488  1.00  0.00           H  
HETATM  108  H52 UNL     1       0.236  -0.222  -0.451  1.00  0.00           H  
HETATM  109  H53 UNL     1       1.408  -1.292  -2.438  1.00  0.00           H  
HETATM  110  H54 UNL     1      -0.026  -0.970  -3.462  1.00  0.00           H  
HETATM  111  H55 UNL     1      -0.112  -3.208  -2.519  1.00  0.00           H  
HETATM  112  H56 UNL     1      -0.084  -2.567  -0.875  1.00  0.00           H  
HETATM  113  H57 UNL     1      -2.197  -1.295  -1.245  1.00  0.00           H  
HETATM  114  H58 UNL     1      -2.259  -1.927  -2.951  1.00  0.00           H  
HETATM  115  H59 UNL     1      -2.460  -3.382  -0.264  1.00  0.00           H  
HETATM  116  H60 UNL     1      -3.750  -3.060  -1.439  1.00  0.00           H  
HETATM  117  H61 UNL     1      -1.463  -4.998  -2.178  1.00  0.00           H  
HETATM  118  H62 UNL     1      -2.951  -4.535  -3.084  1.00  0.00           H  
HETATM  119  H63 UNL     1      -3.228  -6.610  -1.878  1.00  0.00           H  
HETATM  120  H64 UNL     1      -4.401  -5.310  -1.429  1.00  0.00           H  
HETATM  121  H65 UNL     1      -3.104  -4.904   0.712  1.00  0.00           H  
HETATM  122  H66 UNL     1      -3.644  -6.619   0.513  1.00  0.00           H  
HETATM  123  H67 UNL     1      -0.875  -5.750  -0.427  1.00  0.00           H  
HETATM  124  H68 UNL     1      -1.600  -7.408  -0.137  1.00  0.00           H  
HETATM  125  H69 UNL     1      -0.000  -6.848   1.531  1.00  0.00           H  
HETATM  126  H70 UNL     1      -1.698  -6.841   2.249  1.00  0.00           H  
HETATM  127  H71 UNL     1      -1.757  -4.388   2.006  1.00  0.00           H  
HETATM  128  H72 UNL     1      -0.123  -4.406   1.207  1.00  0.00           H  
HETATM  129  H73 UNL     1      -0.018  -3.686   3.530  1.00  0.00           H  
HETATM  130  H74 UNL     1       0.869  -5.273   3.405  1.00  0.00           H  
HETATM  131  H75 UNL     1      -1.301  -6.409   4.190  1.00  0.00           H  
HETATM  132  H76 UNL     1      -2.035  -4.791   4.258  1.00  0.00           H  
HETATM  133  H77 UNL     1       0.397  -5.899   5.777  1.00  0.00           H  
HETATM  134  H78 UNL     1      -1.187  -5.659   6.539  1.00  0.00           H  
HETATM  135  H79 UNL     1       0.633  -3.528   5.356  1.00  0.00           H  
HETATM  136  H80 UNL     1       0.546  -3.899   7.051  1.00  0.00           H  
HETATM  137  H81 UNL     1      -1.556  -2.646   5.165  1.00  0.00           H  
HETATM  138  H82 UNL     1      -0.570  -1.827   6.357  1.00  0.00           H  
HETATM  139  H83 UNL     1      -3.062  -3.558   6.887  1.00  0.00           H  
HETATM  140  H84 UNL     1      -2.839  -1.842   6.838  1.00  0.00           H  
HETATM  141  H85 UNL     1      -1.468  -1.650   8.700  1.00  0.00           H  
HETATM  142  H86 UNL     1      -3.009  -2.382   9.092  1.00  0.00           H  
HETATM  143  H87 UNL     1      -1.305  -3.191  10.474  1.00  0.00           H  
HETATM  144  H88 UNL     1      -0.240  -3.669   9.193  1.00  0.00           H  
HETATM  145  H89 UNL     1      -1.214  -5.491  10.338  1.00  0.00           H  
HETATM  146  H90 UNL     1      -1.957  -5.635   8.743  1.00  0.00           H  
HETATM  147  H91 UNL     1      -3.989  -4.439   9.622  1.00  0.00           H  
HETATM  148  H92 UNL     1      -3.165  -4.496  11.263  1.00  0.00           H  
HETATM  149  H93 UNL     1      -2.889  -7.131  10.136  1.00  0.00           H  
HETATM  150  H94 UNL     1      -4.517  -6.639   9.665  1.00  0.00           H  
HETATM  151  H95 UNL     1      -3.983  -6.621  11.433  1.00  0.00           H  
CONECT    1    2   57   58   59
CONECT    2    3   60   61
CONECT    3    4   62   63
CONECT    4    5   64   65
CONECT    5    6   66   67
CONECT    6    7   68   69
CONECT    7    8   70   71
CONECT    8    9   72   73
CONECT    9   10   74   75
CONECT   10   11   76   77
CONECT   11   12   78   79
CONECT   12   13   80   81
CONECT   13   14   82   83
CONECT   14   15   15   84
CONECT   15   16   85
CONECT   16   17   18   86
CONECT   17   87
CONECT   18   19   31   88
CONECT   19   20   89   90
CONECT   20   21
CONECT   21   22   22   23   24
CONECT   24   25
CONECT   25   26   91   92
CONECT   26   27   93   94
CONECT   27   28   29   30
CONECT   28   95   96   97
CONECT   29   98   99  100
CONECT   30  101  102  103
CONECT   31   32  104
CONECT   32   33   33   34
CONECT   34   35  105  106
CONECT   35   36  107  108
CONECT   36   37  109  110
CONECT   37   38  111  112
CONECT   38   39  113  114
CONECT   39   40  115  116
CONECT   40   41  117  118
CONECT   41   42  119  120
CONECT   42   43  121  122
CONECT   43   44  123  124
CONECT   44   45  125  126
CONECT   45   46  127  128
CONECT   46   47  129  130
CONECT   47   48  131  132
CONECT   48   49  133  134
CONECT   49   50  135  136
CONECT   50   51  137  138
CONECT   51   52  139  140
CONECT   52   53  141  142
CONECT   53   54  143  144
CONECT   54   55  145  146
CONECT   55   56  147  148
CONECT   56  149  150  151
END
Download

SMILES for HMDB0011697 (SM(d18:1/24:0))

[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC
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INCHI for HMDB0011697 (SM(d18:1/24:0))

InChI=1S/C47H95N2O6P/c1-6-8-10-12-14-16-18-20-21-22-23-24-25-26-27-29-31-33-35-37-39-41-47(51)48-45(44-55-56(52,53)54-43-42-49(3,4)5)46(50)40-38-36-34-32-30-28-19-17-15-13-11-9-7-2/h38,40,45-46,50H,6-37,39,41-44H2,1-5H3,(H-,48,51,52,53)/b40-38+/t45-,46+/m0/s1
Download
View in JSmolView Stereo Labels
Synonyms
ValueSource
(2S,3R,4E)-3-Hydroxy-2-(tetracosanoylamino)octadec-4-en-1-yl 2-(trimethylammonio)ethyl phosphateChEBI
C24 SphingomyelinChEBI
N-(Tetracosanoyl)-sphing-4-enine-1-phosphocholineChEBI
N-Lignoceroylsphing-4-enine-1-phosphocholineChEBI
N-Tetracosanoylsphing-4-enine-1-phosphocholineChEBI
N-Tetracosanoylsphingosine-1-phosphocholineChEBI
SM(d18:1/24:0)ChEBI
SPH(d18:1/24:0)ChEBI
Sphingomyelin (d18:1/24:0)ChEBI
(2S,3R,4E)-3-Hydroxy-2-(tetracosanoylamino)octadec-4-en-1-yl 2-(trimethylammonio)ethyl phosphoric acidGenerator
24:0 SphingomyelinHMDB
C24-SphingomyelinHMDB
Lignoceroyl sphingomyelinHMDB
SM d18:1/24:0HMDB
Sphingomyelin (d18:1,C24:0)HMDB
Sphingomyelin C24:0HMDB
Tetracosanoyl sphingomyelinHMDB
Chemical FormulaC47H95N2O6P
Average Molecular Weight815.259
Monoisotopic Molecular Weight814.692775785
IUPAC Name(2-{[(2S,3R,4E)-3-hydroxy-2-tetracosanamidooctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium
Traditional Name(2-{[(2S,3R,4E)-3-hydroxy-2-tetracosanamidooctadec-4-en-1-yl phosphono]oxy}ethyl)trimethylazanium
CAS Registry Number60037-60-7
SMILES
[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC
InChI Identifier
InChI=1S/C47H95N2O6P/c1-6-8-10-12-14-16-18-20-21-22-23-24-25-26-27-29-31-33-35-37-39-41-47(51)48-45(44-55-56(52,53)54-43-42-49(3,4)5)46(50)40-38-36-34-32-30-28-19-17-15-13-11-9-7-2/h38,40,45-46,50H,6-37,39,41-44H2,1-5H3,(H-,48,51,52,53)/b40-38+/t45-,46+/m0/s1
InChI KeyQEDPUVGSSDPBMD-XTAIVQBESA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphosphingolipids. These are sphingolipids with a structure based on a sphingoid base that is attached to a phosphate head group. They differ from phosphonospingolipids which have a phosphonate head group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSphingolipids
Sub ClassPhosphosphingolipids
Direct ParentPhosphosphingolipids
Alternative Parents
Substituents
  • Sphingoid-1-phosphate or derivatives
  • Phosphocholine
  • Phosphoethanolamine
  • Dialkyl phosphate
  • Fatty amide
  • N-acyl-amine
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Fatty acyl
  • Alkyl phosphate
  • Tetraalkylammonium salt
  • Quaternary ammonium salt
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Carboxamide group
  • Carboxylic acid derivative
  • Organic zwitterion
  • Alcohol
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Amine
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Health effectOrganoleptic effect
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility3.2e-05 g/LALOGPS
logP6.3ALOGPS
logP10.53ChemAxon
logS-7.5ALOGPS
pKa (Strongest Acidic)1.87ChemAxon
pKa (Strongest Basic)-1.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area107.92 ŲChemAxon
Rotatable Bond Count44ChemAxon
Refractivity250.75 m³·mol⁻¹ChemAxon
Polarizability105.97 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+294.84330932474
DeepCCS[M-H]-292.44730932474
DeepCCS[M-2H]-325.44130932474
DeepCCS[M+Na]+300.75630932474
AllCCS[M+H]+302.332859911
AllCCS[M+H-H2O]+302.232859911
AllCCS[M+NH4]+302.532859911
AllCCS[M+Na]+302.532859911
AllCCS[M-H]-294.432859911
AllCCS[M+Na-2H]-297.732859911
AllCCS[M+HCOO]-301.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
SM(d18:1/24:0)[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC5050.2Standard polar33892256
SM(d18:1/24:0)[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC4519.3Standard non polar33892256
SM(d18:1/24:0)[H][C@@](COP([O-])(=O)OCC[N+](C)(C)C)(NC(=O)CCCCCCCCCCCCCCCCCCCCCCC)[C@H](O)\C=C\CCCCCCCCCCCCC5761.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - SM(d18:1/24:0) GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-19Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - SM(d18:1/24:0) GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-19Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 10V, Positive-QTOFsplash10-0159-0600000090-f5519799d1c743c6e73b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 20V, Positive-QTOFsplash10-0159-0600000090-f5519799d1c743c6e73b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 40V, Positive-QTOFsplash10-001i-0900000110-7a812b45adfe7e90210b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 10V, Negative-QTOFsplash10-03di-0000000090-298f905f572a69edbbab2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 20V, Negative-QTOFsplash10-03di-1000000490-ad474f4c75e53b9e2ff52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 40V, Negative-QTOFsplash10-004i-9100000000-49e8fc2840d4d7631a342021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 10V, Positive-QTOFsplash10-000i-0000001190-14252e1db9e537b575c42021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 20V, Positive-QTOFsplash10-0ue0-0000009290-f62dd7bd1e595351ff052021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 40V, Positive-QTOFsplash10-0udi-0000009110-e496cdbc6ef1d7b062922021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 10V, Positive-QTOFsplash10-00di-0000001190-2b6a2750f5a5d830d2462021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 20V, Positive-QTOFsplash10-00e0-0000009290-412ebc2cf4044212f1672021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - SM(d18:1/24:0) 40V, Positive-QTOFsplash10-000i-0000009110-e080231fafd2956c5d4e2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
  • Cerebrospinal Fluid (CSF)
  • Saliva
  • Urine
Tissue Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified11.0-39.0 uMAdult (>18 years old)Both
Normal		 details
BloodDetected and Quantified14.4 (12.1-16.6) uMNewborn (0-30 days old)Not Available
Normal		 details
BloodDetected and Quantified19.3 (16.2-23.5) uMInfant (0-1 year old)Not Available
Normal		 details
BloodDetected and Quantified12.5 +/- 0.6 uMAdult (>18 years old)BothNormal details
BloodDetected and Quantified22.0 +/- 4.73 uMAdult (>18 years old)BothNormal details
Cerebrospinal Fluid (CSF)Detected and Quantified0.114 +/- 0.022 uMAdult (>18 years old)Not SpecifiedNormal details
SalivaDetected and Quantified0.222 +/- 0.090 uMAdult (>18 years old)BothNormal
    • Zerihun T. Dame, ...
 details
UrineDetected and Quantified0.0085 (0.0047-0.02) umol/mmol creatinineAdult (>18 years old)Both
Normal		 details
UrineDetected and Quantified0.032 +/- 0.0606 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Normal
    • Analysis of 30 no...
 details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified17.5 +/- 5.2 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
BloodDetected and Quantified19.6 +/- 6.4 uMChildren (1-13 years old)Both
Obesity
    • Metabolomics reve...
 details
UrineDetected and Quantified0.0157 +/- 0.0069 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Eosinophilic esophagitis
    • Analysis of 30 no...
 details
UrineDetected and Quantified0.019 +/- 0.0129 umol/mmol creatinineChildren (1 - 13 years old)Not Specified
Gastroesophageal reflux disease
    • Analysis of 30 no...
 details
Associated Disorders and Diseases
Disease References
Obesity
  1. Simone Wahl, Christina Holzapfel, Zhonghao Yu, Michaela Breier, Ivan Kondofersky, Christiane Fuchs, Paula Singmann, Cornelia Prehn, Jerzy Adamski, Harald Grallert, Thomas Illig, Rui Wang-Sattler, Thomas Reinehr (2013). Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children. Metabolomics.
Eosinophilic esophagitis
  1. Slae, M., Huynh, H., Wishart, D.S. (2014). Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work). NA.
Associated OMIM IDs
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24846875
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44260127
PDB IDNot Available
ChEBI ID83360
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Ding J, Sorensen CM, Jaitly N, Jiang H, Orton DJ, Monroe ME, Moore RJ, Smith RD, Metz TO: Application of the accurate mass and time tag approach in studies of the human blood lipidome. J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Aug 15;871(2):243-52. doi: 10.1016/j.jchromb.2008.04.040. Epub 2008 May 7. [PubMed:18502191 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  7. Ghosh S, Strum JC, Bell RM: Lipid biochemistry: functions of glycerolipids and sphingolipids in cellular signaling. FASEB J. 1997 Jan;11(1):45-50. [PubMed:9034165 ]
  8. Hannun YA: The sphingomyelin cycle and the second messenger function of ceramide. J Biol Chem. 1994 Feb 4;269(5):3125-8. [PubMed:8106344 ]
  9. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  10. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Only showing the first 10 proteins. There are 50 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
Catalyzes the formation of some glycolipid via the addition of N-acetylgalactosamine (GalNAc) in alpha-1,3-linkage to some substrate. Glycolipids probably serve for adherence of some pathogens
Gene Name:
GBGT1
Uniprot ID:
Q8N5D6
Molecular weight:
40126.9
Enzyme Details
2. N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
General function:
Involved in N-acetylglucosaminylphosphatidylinositol de
Specific function:
Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
Gene Name:
PIGL
Uniprot ID:
Q9Y2B2
Molecular weight:
28530.965
Enzyme Details
3. Sphingomyelin phosphodiesterase
General function:
Involved in hydrolase activity
Specific function:
Converts sphingomyelin to ceramide. Also has phospholipase C activities toward 1,2-diacylglycerolphosphocholine and 1,2-diacylglycerolphosphoglycerol. Isoform 2 and isoform 3 have lost catalytic activity.
Gene Name:
SMPD1
Uniprot ID:
P17405
Molecular weight:
69935.53
Enzyme Details
4. Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
General function:
Involved in galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
Specific function:
Involved in the biosynthesis of L2/HNK-1 carbohydrate epitope on glycoproteins. Can also play a role in glycosaminoglycan biosynthesis. Substrates include asialo-orosomucoid (ASOR), asialo-fetuin, and asialo-neural cell adhesion molecule. Requires sphingomyelin for activity: stearoyl-sphingomyelin was the most effective, followed by palmitoyl-sphingomyelin and lignoceroyl-sphingomyelin. Activity was demonstrated only for sphingomyelin with a saturated fatty acid and not for that with an unsaturated fatty acid, regardless of the length of the acyl group (By similarity).
Gene Name:
B3GAT1
Uniprot ID:
Q9P2W7
Molecular weight:
38255.675
Enzyme Details
5. Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGQ
Uniprot ID:
Q9BRB3
Molecular weight:
65343.25
Enzyme Details
6. Phosphatidylinositol N-acetylglucosaminyltransferase subunit A
General function:
Involved in biosynthetic process
Specific function:
Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis.
Gene Name:
PIGA
Uniprot ID:
P37287
Molecular weight:
54126.065
Enzyme Details
7. Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltr
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGH
Uniprot ID:
Q14442
Molecular weight:
21080.415
Enzyme Details
8. Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltr
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGP
Uniprot ID:
P57054
Molecular weight:
18089.055
Enzyme Details
9. Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
General function:
Involved in phosphatidylinositol N-acetylglucosaminyltransferase activity
Specific function:
Part of the complex catalyzing the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.
Gene Name:
PIGC
Uniprot ID:
Q92535
Molecular weight:
33582.18
Enzyme Details
10. Ectonucleotide pyrophosphatase/phosphodiesterase family member 7
General function:
Involved in catalytic activity
Specific function:
Converts sphingomyelin to ceramide. Also has phospholipase C activity toward palmitoyl lyso-phosphocholine. Does not appear to have nucleotide pyrophosphatase activity.
Gene Name:
ENPP7
Uniprot ID:
Q6UWV6
Molecular weight:
51493.415

Only showing the first 10 proteins. There are 50 proteins in total.

Show all enzymes and transporters