Record Information |
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Version | 5.0 |
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Status | Expected but not Quantified |
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Creation Date | 2017-09-09 04:43:49 UTC |
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Update Date | 2022-11-30 19:26:12 UTC |
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HMDB ID | HMDB0115445 |
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Secondary Accession Numbers | None |
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Metabolite Identification |
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Common Name | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) |
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Description | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) is a phosphatidic acid. It is a glycerophospholipid in which a phosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidic acids can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)), in particular, consists of one chain of lignoceric acid at the C-1 position and one chain of eicosapentaenoic acid at the C-2 position. Phosphatidic acids are quite rare but are extremely important as intermediates in the biosynthesis of triacylglycerols and phospholipids. |
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Structure | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC InChI=1S/C47H83O8P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-27-29-31-33-35-37-39-41-46(48)53-43-45(44-54-56(50,51)52)55-47(49)42-40-38-36-34-32-30-28-25-20-18-16-14-12-10-8-6-4-2/h6,8,12,14,18,20,28,30,34,36,45H,3-5,7,9-11,13,15-17,19,21-27,29,31-33,35,37-44H2,1-2H3,(H2,50,51,52)/b8-6-,14-12-,20-18-,30-28-,36-34-/t45-/m1/s1 |
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Synonyms | Value | Source |
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1-lignoceroyl-2-eicosapentaenoyl-sn-glycero-3-phosphate | SMPDB, HMDB | 1-lignoceroyl-2-eicosapentaenoyl-sn-phosphatidic acid | SMPDB, HMDB | PA(24:0/20:5) | SMPDB, HMDB | PA(24:0/20:5n3) | SMPDB, HMDB | PA(24:0/20:5w3) | SMPDB, HMDB | PA(44:5) | SMPDB, HMDB | Phosphatidic acid(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) | SMPDB, HMDB | Phosphatidic acid(24:0/20:5) | SMPDB, HMDB | Phosphatidic acid(24:0/20:5n3) | SMPDB, HMDB | Phosphatidic acid(24:0/20:5w3) | SMPDB, HMDB | Phosphatidic acid(44:5) | SMPDB, HMDB | Phosphatidate(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) | SMPDB, HMDB | Phosphatidate(24:0/20:5) | SMPDB, HMDB | Phosphatidate(24:0/20:5n3) | SMPDB, HMDB | Phosphatidate(24:0/20:5w3) | SMPDB, HMDB | Phosphatidate(44:5) | SMPDB, HMDB | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) | SMPDB | [(2R)-2-[(5Z,8Z,11Z,14Z,17Z)-Icosa-5,8,11,14,17-pentaenoyloxy]-3-(tetracosanoyloxy)propoxy]phosphonate | Generator, HMDB |
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Chemical Formula | C47H83O8P |
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Average Molecular Weight | 807.147 |
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Monoisotopic Molecular Weight | 806.582556631 |
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IUPAC Name | [(2R)-2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]-3-(tetracosanoyloxy)propoxy]phosphonic acid |
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Traditional Name | (2R)-2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]-3-(tetracosanoyloxy)propoxyphosphonic acid |
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CAS Registry Number | Not Available |
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SMILES | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC |
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InChI Identifier | InChI=1S/C47H83O8P/c1-3-5-7-9-11-13-15-17-19-21-22-23-24-26-27-29-31-33-35-37-39-41-46(48)53-43-45(44-54-56(50,51)52)55-47(49)42-40-38-36-34-32-30-28-25-20-18-16-14-12-10-8-6-4-2/h6,8,12,14,18,20,28,30,34,36,45H,3-5,7,9-11,13,15-17,19,21-27,29,31-33,35,37-44H2,1-2H3,(H2,50,51,52)/b8-6-,14-12-,20-18-,30-28-,36-34-/t45-/m1/s1 |
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InChI Key | FKZOPZWYMIBWFI-NLNFDODBSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as 1,2-diacylglycerol-3-phosphates. These are glycerol-3-phosphates in which the glycerol moiety is bonded to two aliphatic chains through ester linkages. |
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Kingdom | Organic compounds |
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Super Class | Lipids and lipid-like molecules |
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Class | Glycerophospholipids |
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Sub Class | Glycerophosphates |
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Direct Parent | 1,2-diacylglycerol-3-phosphates |
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Alternative Parents | |
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Substituents | - 1,2-diacylglycerol-3-phosphate
- Fatty acid ester
- Monoalkyl phosphate
- Dicarboxylic acid or derivatives
- Fatty acyl
- Alkyl phosphate
- Phosphoric acid ester
- Organic phosphoric acid derivative
- Carboxylic acid ester
- Carboxylic acid derivative
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organooxygen compound
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | Not Available |
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Process | Naturally occurring processBiological processBiochemical pathwayMetabolic pathway- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/24:0) (PathBank: SMP0020576)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/14:1(9Z)) (PathBank: SMP0020577)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/16:1(9Z)) (PathBank: SMP0020578)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/18:1(11Z)) (PathBank: SMP0020579)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z)) (PathBank: SMP0020580)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:1(11Z)) (PathBank: SMP0020581)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:3(5Z,8Z,11Z)) (PathBank: SMP0020582)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/22:1(13Z)) (PathBank: SMP0020583)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/24:1(15Z)) (PathBank: SMP0020584)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/18:2(9Z,12Z)) (PathBank: SMP0020585)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/18:3(6Z,9Z,12Z)) (PathBank: SMP0020586)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:4(5Z,8Z,11Z,14Z)) (PathBank: SMP0020587)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/22:2(13Z,16Z)) (PathBank: SMP0020588)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/22:4(7Z,10Z,13Z,16Z)) (PathBank: SMP0020589)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/22:5(4Z,7Z,10Z,13Z,16Z)) (PathBank: SMP0020590)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/18:3(9Z,12Z,15Z)) (PathBank: SMP0020591)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z)) (PathBank: SMP0020592)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:4(8Z,11Z,14Z,17Z)) (PathBank: SMP0020593)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (PathBank: SMP0020594)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/22:5(7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0020595)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (PathBank: SMP0020596)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:2(11Z,14Z)) (PathBank: SMP0037047)
- De Novo Triacylglycerol Biosynthesis TG(24:0/20:5(5Z,8Z,11Z,14Z,17Z)/20:3(8Z,11Z,14Z)) (PathBank: SMP0037048)
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Role | Not Available |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedMetabolite | SMILES | Kovats RI Value | Column Type | Reference |
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PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC | 5531.1 | Standard polar | 33892256 | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC | 5089.4 | Standard non polar | 33892256 | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) | [H][C@@](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)(COP(O)(O)=O)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC | 5747.7 | Semi standard non polar | 33892256 |
DerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5767.4 | Semi standard non polar | 33892256 | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 5045.3 | Standard non polar | 33892256 | PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)),1TMS,isomer #1 | CC/C=C\C/C=C\C/C=C\C/C=C\C/C=C\CCCC(=O)O[C@H](COC(=O)CCCCCCCCCCCCCCCCCCCCCCC)COP(=O)(O)O[Si](C)(C)C | 6185.2 | Standard polar | 33892256 |
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| MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Positive-QTOF | splash10-0pbi-1169450640-ec2ee868600b869037a6 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Positive-QTOF | splash10-000i-3279620400-dd66f5559bf5bc66ace7 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Positive-QTOF | splash10-0a73-1189801100-f01594524b943493aa32 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Negative-QTOF | splash10-0kvk-3009020020-9d11ad0da1cb1ab457ae | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Negative-QTOF | splash10-004j-9005000000-6a10cf8a15f4b54be882 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Negative-QTOF | splash10-004i-9000000000-c69ec306313f24717d19 | 2019-02-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Negative-QTOF | splash10-0a4i-0000000090-458f4a2322e886b5d23f | 2021-09-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Negative-QTOF | splash10-0zfr-1109570060-51abb874401c68629d45 | 2021-09-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Negative-QTOF | splash10-0uxr-0009110000-7e81bb52c85ce9a10ff2 | 2021-09-22 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Positive-QTOF | splash10-052r-0000000950-390383d28249724eaa55 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Positive-QTOF | splash10-0a4i-0000000790-27ef6cb596585447be89 | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Positive-QTOF | splash10-0a4i-0000550910-c77fcc0e44e904ad77db | 2021-09-23 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 10V, Positive-QTOF | splash10-004i-0000000090-4221e2cbfa508741075c | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 20V, Positive-QTOF | splash10-0060-0000000990-f136e0aee4943f15a0bc | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - PA(24:0/20:5(5Z,8Z,11Z,14Z,17Z)) 40V, Positive-QTOF | splash10-004i-0000990460-68e6eb9a4aefd7de067e | 2021-09-25 | Wishart Lab | View Spectrum |
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