Record Information |
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Version | 5.0 |
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Status | Detected and Quantified |
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Creation Date | 2005-11-16 15:48:42 UTC |
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Update Date | 2023-02-21 17:14:38 UTC |
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HMDB ID | HMDB0000228 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | Phenol |
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Description | Phenol, is a toxic, colourless crystalline solid with a sweet tarry odor that resembles a hospital smell. It is commonly used as an antiseptic and disinfectant. It is active against a wide range of micro-organisms including some fungi and viruses, but is only slowly effective against spores. It has been used to disinfect skin and to relieve itching. Phenol is also used in the preparation of cosmetics including sunscreens, hair dyes, and skin lightening preparations. It is also used in the production of drugs (it is the starting material in the industrial production of aspirin), weedkillers, and synthetic resins. Phenol can be found in areas with high levels of motor traffic, therefore, people living in crowded urban areas are frequently exposed to traffic-derived phenol vapor. The average (mean +/- SD) phenol concentration in urine among normal individuals living in urban areas is 7.4 +/- 2.2 mg/g of creatinine. Exposure of the skin to concentrated phenol solutions causes chemical burns which may be severe; in laboratories where it is used, it is usually recommended that polyethylene glycol solution is kept available for washing off splashes. Notwithstanding the effects of concentrated solutions, it is also used in cosmetic surgery as an exfoliant, to remove layers of dead skin (Wikipedia ). In some bacteria phenol can be directly synthesized from tyrosine via the enzyme tyrosine phenol-lyase [EC:4.1.99.2]. It can be produced by Escherichia and Pseudomonas. Phenol has been identified as a uremic toxin according to the European Uremic Toxin Working Group (PMID: 22626821 ). |
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Structure | InChI=1S/C6H6O/c7-6-4-2-1-3-5-6/h1-5,7H |
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Synonyms | Value | Source |
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Acide carbolique | ChEBI | Acide phenique | ChEBI | Benzenol | ChEBI | Carbolic acid | ChEBI | Carbolsaeure | ChEBI | Hydroxybenzene | ChEBI | Karbolsaeure | ChEBI | Oxybenzene | ChEBI | Phenic acid | ChEBI | Phenylic acid | ChEBI | Phenylic alcohol | ChEBI | PHOH | ChEBI | Liquefied phenol | Kegg | Phenol for disinfection | Kegg | Phenol, liquefied | Kegg | Paoscle | Kegg | Carbolate | Generator | Phenate | Generator | Phenylate | Generator | Anbesol | HMDB | Benzophenol | HMDB | Campho-phenique cold sore gel | HMDB | Campho-phenique gel | HMDB | Campho-phenique liquid | HMDB | Carbolic acid liquid | HMDB | Carbolic oil | HMDB | Carbolicum acidum | HMDB | Carbolsaure | HMDB | Cepastat lozenges | HMDB | Cuticura pain relieving ointment | HMDB | Fenol | HMDB | Fenolo | HMDB | Fenosmolin | HMDB | Fenosmoline | HMDB | Hydroxy-benzene | HMDB | IPH | HMDB | IZAL | HMDB | Liquid phenol | HMDB | Liquified phenol | HMDB | Monohydroxy benzene | HMDB | Monohydroxybenzene | HMDB | Monophenol | HMDB | Phenic | HMDB | Phenic alcohol | HMDB | Phenol alcohol | HMDB | Phenol homopolymer | HMDB | Phenol liquid | HMDB | Phenol molten | HMDB | Phenol polymer-bound | HMDB | Phenol solution | HMDB | Phenol synthetic | HMDB | Phenolated water | HMDB | Phenolated water for disinfection | HMDB | Phenole | HMDB | Phenosmolin | HMDB | Synthetic phenol | HMDB | Tea polyphenol | HMDB | Phenol, sodium salt | HMDB | Phenolate sodium | HMDB | Carbol | HMDB | Phenolate, sodium | HMDB | Sodium phenolate | HMDB |
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Chemical Formula | C6H6O |
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Average Molecular Weight | 94.1112 |
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Monoisotopic Molecular Weight | 94.041864814 |
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IUPAC Name | phenol |
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Traditional Name | phenol |
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CAS Registry Number | 108-95-2 |
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SMILES | OC1=CC=CC=C1 |
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InChI Identifier | InChI=1S/C6H6O/c7-6-4-2-1-3-5-6/h1-5,7H |
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InChI Key | ISWSIDIOOBJBQZ-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as 1-hydroxy-4-unsubstituted benzenoids. These are phenols that are unsubstituted at the 4-position. |
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Kingdom | Organic compounds |
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Super Class | Benzenoids |
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Class | Phenols |
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Sub Class | 1-hydroxy-4-unsubstituted benzenoids |
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Direct Parent | 1-hydroxy-4-unsubstituted benzenoids |
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Alternative Parents | |
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Substituents | - 1-hydroxy-4-unsubstituted benzenoid
- 1-hydroxy-2-unsubstituted benzenoid
- Monocyclic benzene moiety
- Organic oxygen compound
- Hydrocarbon derivative
- Organooxygen compound
- Aromatic homomonocyclic compound
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Molecular Framework | Aromatic homomonocyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | |
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Disposition | |
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Process | |
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Role | |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | 40.9 °C | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | 82.8 mg/mL at 25 °C | Not Available | LogP | 1.46 | HANSCH,C ET AL. (1995) |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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Phenol,1TMS,isomer #1 | C[Si](C)(C)OC1=CC=CC=C1 | 1055.1 | Semi standard non polar | 33892256 | Phenol,1TMS,isomer #1 | C[Si](C)(C)OC1=CC=CC=C1 | 1038.1 | Standard non polar | 33892256 | Phenol,1TMS,isomer #1 | C[Si](C)(C)OC1=CC=CC=C1 | 1242.0 | Standard polar | 33892256 | Phenol,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC=CC=C1 | 1308.3 | Semi standard non polar | 33892256 | Phenol,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC=CC=C1 | 1264.1 | Standard non polar | 33892256 | Phenol,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC1=CC=CC=C1 | 1450.6 | Standard polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental GC-MS | GC-MS Spectrum - Phenol GC-MS (1 TMS) | splash10-0udi-3900000000-97dfa3be718a9ee7ace4 | 2014-06-16 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol EI-B (Non-derivatized) | splash10-00kf-9000000000-6fb456992902a13931f9 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol EI-B (Non-derivatized) | splash10-0006-9000000000-78c83ab6ff1d3dfdbec6 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol EI-B (Non-derivatized) | splash10-0006-9000000000-89b0c430b8924ee2afde | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol EI-B (Non-derivatized) | splash10-0006-9000000000-fc01d0ad6740cfd70e13 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol EI-B (Non-derivatized) | splash10-006w-9000000000-c8b41f2899ca8cc9d4bc | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol EI-B (Non-derivatized) | splash10-0006-9000000000-db80d8b605e20595c679 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - Phenol GC-MS (Non-derivatized) | splash10-0udi-3900000000-97dfa3be718a9ee7ace4 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Phenol GC-MS (Non-derivatized) - 70eV, Positive | splash10-0006-9000000000-c35c89484e2499c62a49 | 2016-09-22 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Phenol GC-MS (1 TMS) - 70eV, Positive | splash10-0g4i-9300000000-afd565a878ea36c74def | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - Phenol GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | MS | Mass Spectrum (Electron Ionization) | splash10-00kf-9000000000-40b376f4e58c23369a01 | 2014-09-20 | Not Available | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol Quattro_QQQ 10V, Negative-QTOF (Annotated) | splash10-0006-9000000000-e67da0571423f0e6b4b8 | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol Quattro_QQQ 25V, Negative-QTOF (Annotated) | splash10-0006-9000000000-e0f57b1e970d0d46597e | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol Quattro_QQQ 40V, Negative-QTOF (Annotated) | splash10-0006-9000000000-e67da0571423f0e6b4b8 | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol EI-B (HITACHI RMU-7M) , Positive-QTOF | splash10-00kf-9000000000-7bfe3b897e928a8f3a2c | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol EI-B (JEOL JMS-01-SG-2) , Positive-QTOF | splash10-0006-9000000000-78c83ab6ff1d3dfdbec6 | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol EI-B (HITACHI RMU-6L) , Positive-QTOF | splash10-0006-9000000000-89b0c430b8924ee2afde | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol EI-B (JEOL JMS-D-3000) , Positive-QTOF | splash10-0006-9000000000-fc01d0ad6740cfd70e13 | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol EI-B (HITACHI M-80B) , Positive-QTOF | splash10-0006-9000000000-ca4fa5905cccbfeab33a | 2012-08-31 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol 10V, Positive-QTOF | splash10-0002-9000000000-e3e33defb000b450bb37 | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol 20V, Positive-QTOF | splash10-0002-9200000000-d63db79771e5931b258f | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - Phenol 40V, Positive-QTOF | splash10-0udi-9000000000-448a4d79ff53d77a8b16 | 2021-09-20 | HMDB team, MONA | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 10V, Positive-QTOF | splash10-0002-9000000000-2c7201e803e029dd1aef | 2016-09-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 20V, Positive-QTOF | splash10-0002-9000000000-3fb3990dfbfbde2b8d57 | 2016-09-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 40V, Positive-QTOF | splash10-0gba-9000000000-d3da8db6579f32d02c6c | 2016-09-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 10V, Negative-QTOF | splash10-0006-9000000000-a74494cda18ab9fb8055 | 2016-09-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 20V, Negative-QTOF | splash10-0006-9000000000-a74494cda18ab9fb8055 | 2016-09-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 40V, Negative-QTOF | splash10-0006-9000000000-03a61ff7da92cb08edf8 | 2016-09-12 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 10V, Positive-QTOF | splash10-0002-9000000000-c65d4a4eaa8adde2ddb4 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 20V, Positive-QTOF | splash10-014j-9000000000-def7a8d52afb63a3cd67 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 40V, Positive-QTOF | splash10-0udi-9000000000-f3c795ffc788635ddbf4 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 10V, Negative-QTOF | splash10-0006-9000000000-08485aaf085c13d5129a | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 20V, Negative-QTOF | splash10-0006-9000000000-08485aaf085c13d5129a | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Phenol 40V, Negative-QTOF | splash10-0006-9000000000-52b0f93832ef13f17bd2 | 2021-09-24 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Experimental 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, experimental) | 2012-12-04 | Wishart Lab | View Spectrum | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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Disease References | Uremia |
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- Duranton F, Cohen G, De Smet R, Rodriguez M, Jankowski J, Vanholder R, Argiles A: Normal and pathologic concentrations of uremic toxins. J Am Soc Nephrol. 2012 Jul;23(7):1258-70. doi: 10.1681/ASN.2011121175. Epub 2012 May 24. [PubMed:22626821 ]
- Guo K, Li L: Differential 12C-/13C-isotope dansylation labeling and fast liquid chromatography/mass spectrometry for absolute and relative quantification of the metabolome. Anal Chem. 2009 May 15;81(10):3919-32. doi: 10.1021/ac900166a. [PubMed:19309105 ]
- Guneral F, Bachmann C: Age-related reference values for urinary organic acids in a healthy Turkish pediatric population. Clin Chem. 1994 Jun;40(6):862-6. [PubMed:8087979 ]
- Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, Bjorndahl TC, Krishnamurthy R, Saleem F, Liu P, Dame ZT, Poelzer J, Huynh J, Yallou FS, Psychogios N, Dong E, Bogumil R, Roehring C, Wishart DS: The human urine metabolome. PLoS One. 2013 Sep 4;8(9):e73076. doi: 10.1371/journal.pone.0073076. eCollection 2013. [PubMed:24023812 ]
- Vanholder R, De Smet R, Glorieux G, Argiles A, Baurmeister U, Brunet P, Clark W, Cohen G, De Deyn PP, Deppisch R, Descamps-Latscha B, Henle T, Jorres A, Lemke HD, Massy ZA, Passlick-Deetjen J, Rodriguez M, Stegmayr B, Stenvinkel P, Tetta C, Wanner C, Zidek W: Review on uremic toxins: classification, concentration, and interindividual variability. Kidney Int. 2003 May;63(5):1934-43. doi: 10.1046/j.1523-1755.2003.00924.x. [PubMed:12675874 ]
- (). Geigy Scientific Tables, 8th Rev edition, pp. 165-177. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp., Basel, Switzerland c1981-1992.. .
- (). Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.. .
| Colorectal cancer |
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- Ni Y, Xie G, Jia W: Metabonomics of human colorectal cancer: new approaches for early diagnosis and biomarker discovery. J Proteome Res. 2014 Sep 5;13(9):3857-70. doi: 10.1021/pr500443c. Epub 2014 Aug 14. [PubMed:25105552 ]
| Ulcerative colitis |
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- Garner CE, Smith S, de Lacy Costello B, White P, Spencer R, Probert CS, Ratcliffe NM: Volatile organic compounds from feces and their potential for diagnosis of gastrointestinal disease. FASEB J. 2007 Jun;21(8):1675-88. Epub 2007 Feb 21. [PubMed:17314143 ]
- Walton C, Fowler DP, Turner C, Jia W, Whitehead RN, Griffiths L, Dawson C, Waring RH, Ramsden DB, Cole JA, Cauchi M, Bessant C, Hunter JO: Analysis of volatile organic compounds of bacterial origin in chronic gastrointestinal diseases. Inflamm Bowel Dis. 2013 Sep;19(10):2069-78. doi: 10.1097/MIB.0b013e31829a91f6. [PubMed:23867873 ]
- De Preter V, Machiels K, Joossens M, Arijs I, Matthys C, Vermeire S, Rutgeerts P, Verbeke K: Faecal metabolite profiling identifies medium-chain fatty acids as discriminating compounds in IBD. Gut. 2015 Mar;64(3):447-58. doi: 10.1136/gutjnl-2013-306423. Epub 2014 May 8. [PubMed:24811995 ]
| Nonalcoholic fatty liver disease |
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- Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, Greenwood R, Sikaroodi M, Lam V, Crotty P, Bailey J, Myers RP, Rioux KP: Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clin Gastroenterol Hepatol. 2013 Jul;11(7):868-75.e1-3. doi: 10.1016/j.cgh.2013.02.015. Epub 2013 Feb 27. [PubMed:23454028 ]
| Crohn's disease |
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- Walton C, Fowler DP, Turner C, Jia W, Whitehead RN, Griffiths L, Dawson C, Waring RH, Ramsden DB, Cole JA, Cauchi M, Bessant C, Hunter JO: Analysis of volatile organic compounds of bacterial origin in chronic gastrointestinal diseases. Inflamm Bowel Dis. 2013 Sep;19(10):2069-78. doi: 10.1097/MIB.0b013e31829a91f6. [PubMed:23867873 ]
- De Preter V, Machiels K, Joossens M, Arijs I, Matthys C, Vermeire S, Rutgeerts P, Verbeke K: Faecal metabolite profiling identifies medium-chain fatty acids as discriminating compounds in IBD. Gut. 2015 Mar;64(3):447-58. doi: 10.1136/gutjnl-2013-306423. Epub 2014 May 8. [PubMed:24811995 ]
| Irritable bowel syndrome |
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- Walton C, Fowler DP, Turner C, Jia W, Whitehead RN, Griffiths L, Dawson C, Waring RH, Ramsden DB, Cole JA, Cauchi M, Bessant C, Hunter JO: Analysis of volatile organic compounds of bacterial origin in chronic gastrointestinal diseases. Inflamm Bowel Dis. 2013 Sep;19(10):2069-78. doi: 10.1097/MIB.0b013e31829a91f6. [PubMed:23867873 ]
| Autism |
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- De Angelis M, Piccolo M, Vannini L, Siragusa S, De Giacomo A, Serrazzanetti DI, Cristofori F, Guerzoni ME, Gobbetti M, Francavilla R: Fecal microbiota and metabolome of children with autism and pervasive developmental disorder not otherwise specified. PLoS One. 2013 Oct 9;8(10):e76993. doi: 10.1371/journal.pone.0076993. eCollection 2013. [PubMed:24130822 ]
| Pervasive developmental disorder not otherwise specified |
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- De Angelis M, Piccolo M, Vannini L, Siragusa S, De Giacomo A, Serrazzanetti DI, Cristofori F, Guerzoni ME, Gobbetti M, Francavilla R: Fecal microbiota and metabolome of children with autism and pervasive developmental disorder not otherwise specified. PLoS One. 2013 Oct 9;8(10):e76993. doi: 10.1371/journal.pone.0076993. eCollection 2013. [PubMed:24130822 ]
| Celiac disease |
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- Francavilla R, Ercolini D, Piccolo M, Vannini L, Siragusa S, De Filippis F, De Pasquale I, Di Cagno R, Di Toma M, Gozzi G, Serrazanetti DI, De Angelis M, Gobbetti M: Salivary microbiota and metabolome associated with celiac disease. Appl Environ Microbiol. 2014 Jun;80(11):3416-25. doi: 10.1128/AEM.00362-14. Epub 2014 Mar 21. [PubMed:24657864 ]
- Di Cagno R, De Angelis M, De Pasquale I, Ndagijimana M, Vernocchi P, Ricciuti P, Gagliardi F, Laghi L, Crecchio C, Guerzoni ME, Gobbetti M, Francavilla R: Duodenal and faecal microbiota of celiac children: molecular, phenotype and metabolome characterization. BMC Microbiol. 2011 Oct 4;11:219. doi: 10.1186/1471-2180-11-219. [PubMed:21970810 ]
| Perillyl alcohol administration for cancer treatment |
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- Silva CL, Passos M, Camara JS: Solid phase microextraction, mass spectrometry and metabolomic approaches for detection of potential urinary cancer biomarkers--a powerful strategy for breast cancer diagnosis. Talanta. 2012 Jan 30;89:360-8. doi: 10.1016/j.talanta.2011.12.041. Epub 2011 Dec 22. [PubMed:22284503 ]
| Eosinophilic esophagitis |
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- Slae, M., Huynh, H., Wishart, D.S. (2014). Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work). NA.
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